STRINGSTRING
vioD vioD CV_3270 CV_3270 vioC vioC vioB vioB vioA vioA cviR cviR rpoB rpoB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
vioDvioD - hydroxylase; Catalyzes the oxygenation of the 6-position of protodeoxyviolaceinate to form proviolacein. (373 aa)
CV_3270Hypothetical protein. (191 aa)
vioCvioC monooxygenase; Catalyzes the hydroxylation of the 16-position of protoviolaceinate and protodeoxyviolaceinate to form violacein and deoxyviolacein, respectively. (429 aa)
vioBVioB - polyketide synthase; Catalyzes the hydrogen peroxide-dependent dimerization of two L-tryptophan-derived molecules (imine form of indole 3-pyruvate (IPA)), to form an uncharacterized product suggested to be indole-3-pyruvate imine dimer that can spontaneously convert into dichlorochromopyrrolate (CPA). The uncharacterized product is the substrate of VioE. (998 aa)
vioAvioA - tryptophan 2-monooxygenase; The enzyme generates the imine form of indole 3-pyruvate (IPA) from L-tryptophan (L-Trp), with concomitant two-electron reduction of O(2) to H(2)O(2). (418 aa)
cviRTranscriptional activator, LuxR/UhpA family of regulators; Identified by sequence similarity; putative; ORF located using Blastx/COG2771. (265 aa)
rpoBDNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1390 aa)
Your Current Organism:
Chromobacterium violaceum
NCBI taxonomy Id: 243365
Other names: C. violaceum ATCC 12472, Chromobacterium violaceum ATCC 12472, Chromobacterium violaceum ATCC12472, Chromobacterium violaceum str. ATCC 12472
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