(17 nodes) Protein secretion by the type II secretion system network (Pseudomonas lutea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KGF63696.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (167 aa)
	KGF64873.1	General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology. (781 aa)
	KGF64878.1	General secretion pathway protein GspI; Derived by automated computational analysis using gene prediction method: Protein Homology. (122 aa)
	KGF64879.1	General secretion pathway protein GspH; Derived by automated computational analysis using gene prediction method: Protein Homology. (145 aa)
	KGF64880.1	General secretion pathway protein GspG; Derived by automated computational analysis using gene prediction method: Protein Homology. (141 aa)
	KGF64881.1	General secretion pathway protein GspF; Derived by automated computational analysis using gene prediction method: Protein Homology. (400 aa)
	KGF64889.1	Peptidase M4; Extracellular zinc metalloprotease. (354 aa)
	KGF65176.1	General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology. (784 aa)
	KGF65178.1	General secretion pathway protein GspM; Derived by automated computational analysis using gene prediction method: Protein Homology. (207 aa)
	KGF65182.1	General secretion pathway protein GspI; Derived by automated computational analysis using gene prediction method: Protein Homology. (124 aa)
	KGF65183.1	General secretion pathway protein GspH; Derived by automated computational analysis using gene prediction method: Protein Homology. (145 aa)
	KGF65184.1	General secretion pathway protein GspG; Derived by automated computational analysis using gene prediction method: Protein Homology. (142 aa)
	KGF65185.1	General secretion pathway protein GspF; Derived by automated computational analysis using gene prediction method: Protein Homology. (404 aa)
	KGF65614.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family. (331 aa)
	KGF66195.1	Competence protein ComEA; Derived by automated computational analysis using gene prediction method: Protein Homology. (111 aa)
	KGF63664.1	Type II secretion system protein F; Derived by automated computational analysis using gene prediction method: Protein Homology. (405 aa)
	KGF63691.1	General secretion pathway protein GspH; Derived by automated computational analysis using gene prediction method: Protein Homology. (160 aa)

Your Current Organism:

Pseudomonas lutea

NCBI taxonomy Id: 243924
Other names: CECT 5822, LMG 21974, LMG:21974, P. lutea, Pseudomonas lutea Peix et al. 2004, strain OK2

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KGF63664.1	KGF64873.1	LT42_17375	LT42_02565	Type II secretion system protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.575
KGF63664.1	KGF64878.1	LT42_17375	LT42_02595	Type II secretion system protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspI; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.586
KGF63664.1	KGF64880.1	LT42_17375	LT42_02605	Type II secretion system protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspG; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.738
KGF63664.1	KGF65176.1	LT42_17375	LT42_04260	Type II secretion system protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.569
KGF63664.1	KGF65182.1	LT42_17375	LT42_04290	Type II secretion system protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspI; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.586
KGF63664.1	KGF65184.1	LT42_17375	LT42_04300	Type II secretion system protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspG; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.743
KGF63664.1	KGF66195.1	LT42_17375	LT42_09960	Type II secretion system protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.	Competence protein ComEA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.633
KGF63691.1	KGF63696.1	LT42_17535	LT42_17560	General secretion pathway protein GspH; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.823
KGF63696.1	KGF63691.1	LT42_17560	LT42_17535	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspH; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.823
KGF64873.1	KGF63664.1	LT42_02565	LT42_17375	General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type II secretion system protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.575
KGF64873.1	KGF64879.1	LT42_02565	LT42_02600	General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspH; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
KGF64873.1	KGF64880.1	LT42_02565	LT42_02605	General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspG; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.811
KGF64873.1	KGF64881.1	LT42_02565	LT42_02610	General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspF; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.747
KGF64873.1	KGF65178.1	LT42_02565	LT42_04270	General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspM; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.594
KGF64873.1	KGF65183.1	LT42_02565	LT42_04295	General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspH; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
KGF64873.1	KGF65184.1	LT42_02565	LT42_04300	General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspG; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.809
KGF64873.1	KGF65185.1	LT42_02565	LT42_04305	General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspF; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.750
KGF64878.1	KGF63664.1	LT42_02595	LT42_17375	General secretion pathway protein GspI; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type II secretion system protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.586
KGF64878.1	KGF64879.1	LT42_02595	LT42_02600	General secretion pathway protein GspI; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspH; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.838
KGF64878.1	KGF64880.1	LT42_02595	LT42_02605	General secretion pathway protein GspI; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspG; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.784