STRINGSTRING
KGF63992.1 KGF63992.1 clpA clpA KGF64455.1 KGF64455.1 KGF64581.1 KGF64581.1 uvrB uvrB htpG htpG kdpB kdpB KGF64769.1 KGF64769.1 KGF64788.1 KGF64788.1 KGF64915.1 KGF64915.1 KGF64990.1 KGF64990.1 fliI fliI KGF65192.1 KGF65192.1 KGF65261.1 KGF65261.1 KGF65390.1 KGF65390.1 KGF65404.1 KGF65404.1 KGF65858.1 KGF65858.1 KGF65908.1 KGF65908.1 smc smc KGF65974.1 KGF65974.1 fliI-2 fliI-2 deaD deaD KGF66322.1 KGF66322.1 dinG dinG KGF66419.1 KGF66419.1 hscA hscA recB recB lon lon clpX clpX KGF62971.1 KGF62971.1 KGF63076.1 KGF63076.1 KGF63120.1 KGF63120.1 ruvB ruvB ruvA ruvA lon-2 lon-2 KGF63343.1 KGF63343.1 zapE zapE rhlB rhlB hflB hflB KGF63640.1 KGF63640.1 clpB clpB KGF63818.1 KGF63818.1 mutL mutL hslU hslU rep rep recG recG uvrD uvrD KGF64297.1 KGF64297.1 uvrA uvrA KGF62598.1 KGF62598.1 KGF62631.1 KGF62631.1 ychF ychF KGF62779.1 KGF62779.1 KGF62231.1 KGF62231.1 rhlE rhlE
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
KGF63992.1ATPase P; Derived by automated computational analysis using gene prediction method: Protein Homology. (748 aa)
clpAClp protease ClpX; ATPase and specificity subunit of the ClpA-ClpP ATP dependent serine protease; directs protease to specific substrates; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ClpA/ClpB family. (756 aa)
KGF64455.1Recombination factor protein RarA; Derived by automated computational analysis using gene prediction method: Protein Homology. (441 aa)
KGF64581.1ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (373 aa)
uvrBExcinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] (671 aa)
htpGHeat shock protein 90; Molecular chaperone. Has ATPase activity. (634 aa)
kdpBPotassium-transporting ATPase subunit B; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system. Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IA subfamily. (702 aa)
KGF64769.1ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. (305 aa)
KGF64788.1ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ClpA/ClpB family. (887 aa)
KGF64915.1Helicase UvrD; Derived by automated computational analysis using gene prediction method: Protein Homology. (838 aa)
KGF64990.1Excinuclease ABC subunit A; Derived by automated computational analysis using gene prediction method: Protein Homology. (889 aa)
fliIATP synthase; Involved in type III protein export during flagellum assembly; Derived by automated computational analysis using gene prediction method: Protein Homology. (442 aa)
KGF65192.1Integrase; Derived by automated computational analysis using gene prediction method: Protein Homology. (343 aa)
KGF65261.1ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ClpA/ClpB family. (875 aa)
KGF65390.1Metal ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (735 aa)
KGF65404.1Magnesium chelatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (368 aa)
KGF65858.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (635 aa)
KGF65908.1Carbonate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (838 aa)
smcChromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family. (1162 aa)
KGF65974.1Cobyrinic acid a,c-diamide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (277 aa)
fliI-2ATP synthase; Involved in type III protein export during flagellum assembly; Derived by automated computational analysis using gene prediction method: Protein Homology. (452 aa)
deaDRNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. (558 aa)
KGF66322.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (534 aa)
dinGATP-dependent DNA helicase DinG; DNA-dependent ATPase and 5'-3' DNA helicase. (714 aa)
KGF66419.1ATP-binding protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family. (364 aa)
hscAChaperone protein HscA; Chaperone involved in the maturation of iron-sulfur cluster- containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB. (620 aa)
recBExodeoxyribonuclease V subunit beta; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and rep [...] (1232 aa)
lonDNA-binding protein; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. (798 aa)
clpXClp protease ATP-binding protein; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. (427 aa)
KGF62971.1ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. (319 aa)
KGF63076.1ATPase; with MinC inhibits cell division by blocking formation of the polar Z ring septums; Derived by automated computational analysis using gene prediction method: Protein Homology. (270 aa)
KGF63120.1ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. (281 aa)
ruvBATP-dependent DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (351 aa)
ruvAATP-dependent DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (202 aa)
lon-2Lon protease; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. (805 aa)
KGF63343.1ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. (357 aa)
zapEATPase; Reduces the stability of FtsZ polymers in the presence of ATP. (364 aa)
rhlBATP-dependent RNA helicase RhlB; DEAD-box RNA helicase involved in RNA degradation. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. Belongs to the DEAD box helicase family. RhlB subfamily. (487 aa)
hflBATP-dependent metalloprotease; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. (636 aa)
KGF63640.1Helicase DnaB; Derived by automated computational analysis using gene prediction method: Protein Homology. (459 aa)
clpBProtein disaggregation chaperone; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family. (854 aa)
KGF63818.1DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. (465 aa)
mutLDNA mismatch repair protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. (661 aa)
hslUATP-dependent protease ATP-binding subunit HslU; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis. (445 aa)
repATP-dependent DNA helicase Rep; Rep helicase is a single-stranded DNA-dependent ATPase involved in DNA replication; it can initiate unwinding at a nick in the DNA. It binds to the single-stranded DNA and acts in a progressive fashion along the DNA in the 3' to 5' direction. (669 aa)
recGATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. (691 aa)
uvrDDNA-dependent helicase II; Unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair; Derived by automated computational analysis using gene prediction method: Protein Homology. (727 aa)
KGF64297.1Cadmium ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (649 aa)
uvrAExcinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (944 aa)
KGF62598.1DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DEAD box helicase family. (445 aa)
KGF62631.1Magnesium ABC transporter ATPase; P-type; involved in magnesium transport into the cytoplasm; Derived by automated computational analysis using gene prediction method: Protein Homology. (909 aa)
ychFGTP-binding protein; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. (366 aa)
KGF62779.1ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (554 aa)
KGF62231.1Twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology. (344 aa)
rhlEDEAD/DEAH box helicase; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. (636 aa)
Your Current Organism:
Pseudomonas lutea
NCBI taxonomy Id: 243924
Other names: CECT 5822, LMG 21974, LMG:21974, P. lutea, Pseudomonas lutea Peix et al. 2004, strain OK2
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