(16 nodes) Prokaryotic N-terminal methylation motif network (Pseudomonas lutea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KGF63696.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (167 aa)
	KGF64878.1	General secretion pathway protein GspI; Derived by automated computational analysis using gene prediction method: Protein Homology. (122 aa)
	KGF64879.1	General secretion pathway protein GspH; Derived by automated computational analysis using gene prediction method: Protein Homology. (145 aa)
	KGF64880.1	General secretion pathway protein GspG; Derived by automated computational analysis using gene prediction method: Protein Homology. (141 aa)
	KGF65181.1	General secretion pathway protein GspJ; Derived by automated computational analysis using gene prediction method: Protein Homology. (212 aa)
	KGF65182.1	General secretion pathway protein GspI; Derived by automated computational analysis using gene prediction method: Protein Homology. (124 aa)
	KGF65183.1	General secretion pathway protein GspH; Derived by automated computational analysis using gene prediction method: Protein Homology. (145 aa)
	KGF65184.1	General secretion pathway protein GspG; Derived by automated computational analysis using gene prediction method: Protein Homology. (142 aa)
	KGF63662.1	Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the N-Me-Phe pilin family. (139 aa)
	KGF63686.1	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (130 aa)
	KGF63689.1	Pilus assembly protein PilW; Derived by automated computational analysis using gene prediction method: Protein Homology. (230 aa)
	KGF63690.1	Pilus assembly protein PilV; Derived by automated computational analysis using gene prediction method: Protein Homology. (153 aa)
	KGF64877.1	General secretion pathway protein GspJ; Derived by automated computational analysis using gene prediction method: Protein Homology. (203 aa)
	KGF63691.1	General secretion pathway protein GspH; Derived by automated computational analysis using gene prediction method: Protein Homology. (160 aa)
	KGF63692.1	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (140 aa)
	KGF63695.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (151 aa)

Your Current Organism:

Pseudomonas lutea

NCBI taxonomy Id: 243924
Other names: CECT 5822, LMG 21974, LMG:21974, P. lutea, Pseudomonas lutea Peix et al. 2004, strain OK2

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KGF63662.1	KGF63686.1	LT42_17365	LT42_17510	Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the N-Me-Phe pilin family.	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.604
KGF63662.1	KGF63689.1	LT42_17365	LT42_17525	Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the N-Me-Phe pilin family.	Pilus assembly protein PilW; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.461
KGF63662.1	KGF63690.1	LT42_17365	LT42_17530	Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the N-Me-Phe pilin family.	Pilus assembly protein PilV; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.412
KGF63662.1	KGF63691.1	LT42_17365	LT42_17535	Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the N-Me-Phe pilin family.	General secretion pathway protein GspH; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.410
KGF63662.1	KGF63692.1	LT42_17365	LT42_17540	Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the N-Me-Phe pilin family.	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.801
KGF63662.1	KGF63695.1	LT42_17365	LT42_17555	Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the N-Me-Phe pilin family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.401
KGF63662.1	KGF63696.1	LT42_17365	LT42_17560	Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the N-Me-Phe pilin family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.487
KGF63662.1	KGF64877.1	LT42_17365	LT42_02590	Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the N-Me-Phe pilin family.	General secretion pathway protein GspJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.918
KGF63662.1	KGF65181.1	LT42_17365	LT42_04285	Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the N-Me-Phe pilin family.	General secretion pathway protein GspJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.918
KGF63686.1	KGF63662.1	LT42_17510	LT42_17365	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the N-Me-Phe pilin family.	0.604
KGF63686.1	KGF63689.1	LT42_17510	LT42_17525	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein PilW; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.950
KGF63686.1	KGF63690.1	LT42_17510	LT42_17530	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein PilV; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.979
KGF63686.1	KGF63691.1	LT42_17510	LT42_17535	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspH; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.972
KGF63686.1	KGF63692.1	LT42_17510	LT42_17540	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.524
KGF63686.1	KGF63695.1	LT42_17510	LT42_17555	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.930
KGF63686.1	KGF63696.1	LT42_17510	LT42_17560	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.893
KGF63686.1	KGF64877.1	LT42_17510	LT42_02590	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.411
KGF63686.1	KGF64879.1	LT42_17510	LT42_02600	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspH; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.575
KGF63686.1	KGF64880.1	LT42_17510	LT42_02605	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspG; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.423
KGF63686.1	KGF65181.1	LT42_17510	LT42_04285	Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	General secretion pathway protein GspJ; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.411