(6 nodes) Biosynthesis of siderophore group nonribosomal peptides network (Pseudomonas lutea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KGF62520.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (150 aa)
	KGF64683.1	Amino acid adenylation protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (3253 aa)
	KGF64684.1	Peptide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (5420 aa)
	KGF63099.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (152 aa)
	KGF63894.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (154 aa)
	KGF62123.1	Peptide transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (1150 aa)

Your Current Organism:

Pseudomonas lutea

NCBI taxonomy Id: 243924
Other names: CECT 5822, LMG 21974, LMG:21974, P. lutea, Pseudomonas lutea Peix et al. 2004, strain OK2

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KGF62123.1	KGF64683.1	LT42_23505	LT42_01475	Peptide transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid adenylation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KGF62123.1	KGF64684.1	LT42_23505	LT42_01480	Peptide transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KGF64683.1	KGF62123.1	LT42_01475	LT42_23505	Amino acid adenylation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KGF64683.1	KGF64684.1	LT42_01475	LT42_01480	Amino acid adenylation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KGF64684.1	KGF62123.1	LT42_01480	LT42_23505	Peptide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KGF64684.1	KGF64683.1	LT42_01480	LT42_01475	Peptide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amino acid adenylation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999