(6 nodes) Mixed, incl. Dioxygenase, and 3,4-dihydroxybenzoate catabolic process network (Mycobacterium nebraskense)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KLO44625.1	Muconolactone delta-isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (102 aa)
	KLO38281.1	3-carboxy-cis,cis-muconate cycloisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (409 aa)
	KLO38282.1	Protocatechuate 3,4-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (187 aa)
	KLO38283.1	Protocatechuate 3,4-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (251 aa)
	KLO36490.1	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (315 aa)
	KLO36237.1	Carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (123 aa)

Your Current Organism:

Mycobacterium nebraskense

NCBI taxonomy Id: 244292
Other names: ATCC BAA-837, DSM 44803, M. nebraskense, Mycobacterium nebraskense Mohamed et al. 2004, Mycobacterium nebraskiae, Mycobacterium sp. UNMC-MY1349

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KLO36237.1	KLO36490.1	ABW17_22850	ABW17_22755	Carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.748
KLO36237.1	KLO38281.1	ABW17_22850	ABW17_21070	Carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-carboxy-cis,cis-muconate cycloisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.954
KLO36237.1	KLO38282.1	ABW17_22850	ABW17_21075	Carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protocatechuate 3,4-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.767
KLO36237.1	KLO38283.1	ABW17_22850	ABW17_21080	Carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protocatechuate 3,4-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.789
KLO36237.1	KLO44625.1	ABW17_22850	ABW17_07945	Carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Muconolactone delta-isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.767
KLO36490.1	KLO36237.1	ABW17_22755	ABW17_22850	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.748
KLO36490.1	KLO38281.1	ABW17_22755	ABW17_21070	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-carboxy-cis,cis-muconate cycloisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.510
KLO36490.1	KLO44625.1	ABW17_22755	ABW17_07945	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Muconolactone delta-isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.777
KLO38281.1	KLO36237.1	ABW17_21070	ABW17_22850	3-carboxy-cis,cis-muconate cycloisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.954
KLO38281.1	KLO36490.1	ABW17_21070	ABW17_22755	3-carboxy-cis,cis-muconate cycloisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Alpha/beta hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.510
KLO38281.1	KLO38282.1	ABW17_21070	ABW17_21075	3-carboxy-cis,cis-muconate cycloisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protocatechuate 3,4-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KLO38281.1	KLO38283.1	ABW17_21070	ABW17_21080	3-carboxy-cis,cis-muconate cycloisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protocatechuate 3,4-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
KLO38281.1	KLO44625.1	ABW17_21070	ABW17_07945	3-carboxy-cis,cis-muconate cycloisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Muconolactone delta-isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.443
KLO38282.1	KLO36237.1	ABW17_21075	ABW17_22850	Protocatechuate 3,4-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.767
KLO38282.1	KLO38281.1	ABW17_21075	ABW17_21070	Protocatechuate 3,4-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-carboxy-cis,cis-muconate cycloisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
KLO38282.1	KLO38283.1	ABW17_21075	ABW17_21080	Protocatechuate 3,4-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protocatechuate 3,4-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
KLO38282.1	KLO44625.1	ABW17_21075	ABW17_07945	Protocatechuate 3,4-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Muconolactone delta-isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.488
KLO38283.1	KLO36237.1	ABW17_21080	ABW17_22850	Protocatechuate 3,4-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Carboxymuconolactone decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.789
KLO38283.1	KLO38281.1	ABW17_21080	ABW17_21070	Protocatechuate 3,4-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-carboxy-cis,cis-muconate cycloisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
KLO38283.1	KLO38282.1	ABW17_21080	ABW17_21075	Protocatechuate 3,4-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Protocatechuate 3,4-dioxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998

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