(25 nodes) Mixed, incl. Domain of unknown function DUF35, rubredoxin-like zinc ribbon domain, N-terminal, and Thiolase network (Mycobacterium nebraskense)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	KLO46808.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (257 aa)
	KLO46677.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (396 aa)
	KLO46678.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (149 aa)
	KLO46680.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (698 aa)
	KLO43040.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (741 aa)
	KLO43041.1	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (402 aa)
	KLO43042.1	Acyl dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (137 aa)
	KLO43043.1	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (445 aa)
	KLO43044.1	acyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CoA-transferase III family. (777 aa)
	KLO43045.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (109 aa)
	KLO43046.1	acetyl-CoA acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (389 aa)
	KLO43047.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (140 aa)
	KLO43048.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (217 aa)
	KLO33888.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (235 aa)
	KLO33899.1	Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family. (394 aa)
	KLO33900.1	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (135 aa)
	KLO33889.1	DitF protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (394 aa)
	KLO32120.1	Nucleic-acid-binding protein containing a Zn-ribbon; Derived by automated computational analysis using gene prediction method: Protein Homology. (126 aa)
	KLO32109.1	Thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (395 aa)
	KLO32110.1	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (384 aa)
	KLO32111.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (68 aa)
	KLO32112.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (463 aa)
	KLO32113.1	Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology. (111 aa)
	KLO32114.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (170 aa)
	KLO32115.1	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (150 aa)

Your Current Organism:

Mycobacterium nebraskense

NCBI taxonomy Id: 244292
Other names: ATCC BAA-837, DSM 44803, M. nebraskense, Mycobacterium nebraskense Mohamed et al. 2004, Mycobacterium nebraskiae, Mycobacterium sp. UNMC-MY1349

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KLO32109.1	KLO32110.1	ABW17_29050	ABW17_29055	Thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.763
KLO32109.1	KLO32113.1	ABW17_29050	ABW17_29070	Thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.600
KLO32109.1	KLO32114.1	ABW17_29050	ABW17_29075	Thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.476
KLO32109.1	KLO32115.1	ABW17_29050	ABW17_29080	Thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.444
KLO32109.1	KLO32120.1	ABW17_29050	ABW17_29045	Thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nucleic-acid-binding protein containing a Zn-ribbon; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.961
KLO32109.1	KLO33888.1	ABW17_29050	ABW17_27695	Thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.478
KLO32109.1	KLO33900.1	ABW17_29050	ABW17_27705	Thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.720
KLO32109.1	KLO43042.1	ABW17_29050	ABW17_10900	Thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Acyl dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.914
KLO32109.1	KLO43047.1	ABW17_29050	ABW17_10925	Thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.843
KLO32109.1	KLO46678.1	ABW17_29050	ABW17_02245	Thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.845
KLO32109.1	KLO46680.1	ABW17_29050	ABW17_02255	Thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.446
KLO32109.1	KLO46808.1	ABW17_29050	ABW17_02235	Thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.474
KLO32110.1	KLO32109.1	ABW17_29055	ABW17_29050	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Thiolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.763
KLO32110.1	KLO32112.1	ABW17_29055	ABW17_29065	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.463
KLO32110.1	KLO32113.1	ABW17_29055	ABW17_29070	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.479
KLO32110.1	KLO32120.1	ABW17_29055	ABW17_29045	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Nucleic-acid-binding protein containing a Zn-ribbon; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.602
KLO32110.1	KLO46808.1	ABW17_29055	ABW17_02235	acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.432
KLO32111.1	KLO32112.1	ABW17_29060	ABW17_29065	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.564
KLO32111.1	KLO32113.1	ABW17_29060	ABW17_29070	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.564
KLO32111.1	KLO32114.1	ABW17_29060	ABW17_29075	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.564

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