STRINGSTRING
KLO47105.1 KLO47105.1 rlmN rlmN KLO47110.1 KLO47110.1 KLO47111.1 KLO47111.1 KLO43791.1 KLO43791.1 nth nth KLO43793.1 KLO43793.1 KLO43794.1 KLO43794.1 KLO43795.1 KLO43795.1 KLO33309.1 KLO33309.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
KLO47105.1General stress protein CsbD; Derived by automated computational analysis using gene prediction method: Protein Homology. (78 aa)
rlmNRNA methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family. (364 aa)
KLO47110.1Soluble secreted antigen MPT53; Derived by automated computational analysis using gene prediction method: Protein Homology. (169 aa)
KLO47111.1Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (289 aa)
KLO43791.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (131 aa)
nthEndonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (226 aa)
KLO43793.1Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (214 aa)
KLO43794.1ADP-ribose pyrophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (266 aa)
KLO43795.1Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology. (402 aa)
KLO33309.1Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (689 aa)
Your Current Organism:
Mycobacterium nebraskense
NCBI taxonomy Id: 244292
Other names: ATCC BAA-837, DSM 44803, M. nebraskense, Mycobacterium nebraskense Mohamed et al. 2004, Mycobacterium nebraskiae, Mycobacterium sp. UNMC-MY1349
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