(6 nodes) Mixed, incl. Regulatory factor X-associated C-terminal binding domain, and RFX5, N-terminal network (Cynoglossus semilaevis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rfxank	Regulatory factor X-associated ankyrin-containing protein. (226 aa)
	LOC103399480	RFXA_RFXANK_bdg domain-containing protein. (148 aa)
	rfxap	Regulatory factor X-associated protein. (213 aa)
	ankra2	Ankyrin repeat, family A (RFXANK-like), 2. (313 aa)
	ciita	Class II major histocompatibility complex transactivator. (918 aa)
	ENSCSEP00000030537	Regulatory factor X, 5. (252 aa)

Your Current Organism:

Cynoglossus semilaevis

NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCSEP00000030537	LOC103399480	ENSCSEP00000030537	ENSCSEP00000011798	Regulatory factor X, 5.	RFXA_RFXANK_bdg domain-containing protein.	0.912
ENSCSEP00000030537	ankra2	ENSCSEP00000030537	ENSCSEP00000020383	Regulatory factor X, 5.	Ankyrin repeat, family A (RFXANK-like), 2.	0.483
ENSCSEP00000030537	ciita	ENSCSEP00000030537	ENSCSEP00000029332	Regulatory factor X, 5.	Class II major histocompatibility complex transactivator.	0.862
ENSCSEP00000030537	rfxank	ENSCSEP00000030537	ENSCSEP00000010525	Regulatory factor X, 5.	Regulatory factor X-associated ankyrin-containing protein.	0.953
ENSCSEP00000030537	rfxap	ENSCSEP00000030537	ENSCSEP00000019103	Regulatory factor X, 5.	Regulatory factor X-associated protein.	0.912
LOC103399480	ENSCSEP00000030537	ENSCSEP00000011798	ENSCSEP00000030537	RFXA_RFXANK_bdg domain-containing protein.	Regulatory factor X, 5.	0.912
LOC103399480	ankra2	ENSCSEP00000011798	ENSCSEP00000020383	RFXA_RFXANK_bdg domain-containing protein.	Ankyrin repeat, family A (RFXANK-like), 2.	0.586
LOC103399480	ciita	ENSCSEP00000011798	ENSCSEP00000029332	RFXA_RFXANK_bdg domain-containing protein.	Class II major histocompatibility complex transactivator.	0.529
LOC103399480	rfxank	ENSCSEP00000011798	ENSCSEP00000010525	RFXA_RFXANK_bdg domain-containing protein.	Regulatory factor X-associated ankyrin-containing protein.	0.756
ankra2	ENSCSEP00000030537	ENSCSEP00000020383	ENSCSEP00000030537	Ankyrin repeat, family A (RFXANK-like), 2.	Regulatory factor X, 5.	0.483
ankra2	LOC103399480	ENSCSEP00000020383	ENSCSEP00000011798	Ankyrin repeat, family A (RFXANK-like), 2.	RFXA_RFXANK_bdg domain-containing protein.	0.586
ankra2	rfxap	ENSCSEP00000020383	ENSCSEP00000019103	Ankyrin repeat, family A (RFXANK-like), 2.	Regulatory factor X-associated protein.	0.586
ciita	ENSCSEP00000030537	ENSCSEP00000029332	ENSCSEP00000030537	Class II major histocompatibility complex transactivator.	Regulatory factor X, 5.	0.862
ciita	LOC103399480	ENSCSEP00000029332	ENSCSEP00000011798	Class II major histocompatibility complex transactivator.	RFXA_RFXANK_bdg domain-containing protein.	0.529
ciita	rfxank	ENSCSEP00000029332	ENSCSEP00000010525	Class II major histocompatibility complex transactivator.	Regulatory factor X-associated ankyrin-containing protein.	0.741
ciita	rfxap	ENSCSEP00000029332	ENSCSEP00000019103	Class II major histocompatibility complex transactivator.	Regulatory factor X-associated protein.	0.529
rfxank	ENSCSEP00000030537	ENSCSEP00000010525	ENSCSEP00000030537	Regulatory factor X-associated ankyrin-containing protein.	Regulatory factor X, 5.	0.953
rfxank	LOC103399480	ENSCSEP00000010525	ENSCSEP00000011798	Regulatory factor X-associated ankyrin-containing protein.	RFXA_RFXANK_bdg domain-containing protein.	0.756
rfxank	ciita	ENSCSEP00000010525	ENSCSEP00000029332	Regulatory factor X-associated ankyrin-containing protein.	Class II major histocompatibility complex transactivator.	0.741
rfxank	rfxap	ENSCSEP00000010525	ENSCSEP00000019103	Regulatory factor X-associated ankyrin-containing protein.	Regulatory factor X-associated protein.	0.756