(45 nodes) Mixed, incl. LRRC8, pannexin-like TM region, and Teneurin Intracellular Region network (Cynoglossus semilaevis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSCSEP00000000089	Leucine rich repeat and fibronectin type III domain containing 5a. (468 aa)
	Nyx	Nyctalopin. (470 aa)
	LOC103389258	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family. (324 aa)
	SZRD1	SUZ RNA binding domain containing 1. (159 aa)
	LOC103390675	Si:dkey-237h12.3. (2664 aa)
	ENSCSEP00000006812	Ig-like domain-containing protein. (729 aa)
	ENSCSEP00000008618	Teneurin transmembrane protein 4. (2735 aa)
	LOC103377856	Uncharacterized protein. (757 aa)
	LOC103390821	Fibronectin leucine rich transmembrane protein 1b. (635 aa)
	LOC103383741	Adhesion G protein-coupled receptor L3.1; Belongs to the G-protein coupled receptor 2 family. (1588 aa)
	ENSCSEP00000009712	SUEL-type lectin domain-containing protein. (100 aa)
	LOC103397836	Leucine rich repeat containing 8 VRAC subunit Ab. (796 aa)
	ADGRL3	Adhesion G protein-coupled receptor L3; Belongs to the G-protein coupled receptor 2 family. (1543 aa)
	frmd6	FERM domain containing 6. (606 aa)
	ENSCSEP00000011565	Leucine rich repeat containing 18a. (314 aa)
	lrrc10b	Uncharacterized protein. (402 aa)
	lrrc8c	Leucine rich repeat containing 8 VRAC subunit C. (794 aa)
	adgrl2	Adhesion G protein-coupled receptor L2a; Belongs to the G-protein coupled receptor 2 family. (1531 aa)
	lrrc2	Uncharacterized protein. (484 aa)
	LOC103396311	Si:ch1073-186i23.1; Belongs to the G-protein coupled receptor 2 family. (1501 aa)
	ENSCSEP00000016953	Teneurin transmembrane protein 3. (2636 aa)
	lrrn3	Leucine rich repeat neuronal 3b. (707 aa)
	LOC103377019	Negative regulator of reactive oxygen species. (687 aa)
	lrrc57	Leucine rich repeat containing 57. (229 aa)
	LOC103398184	Unc-5 netrin receptor C. (965 aa)
	unc5a	Unc-5 netrin receptor A. (916 aa)
	ENSCSEP00000020656	Olfactomedin-like domain-containing protein. (102 aa)
	ENSCSEP00000020714	SUEL-type lectin domain-containing protein. (130 aa)
	unc5d	Unc-5 netrin receptor Da. (940 aa)
	LOC103384172	Si:zfos-323e3.4. (808 aa)
	chad	Chondroadherin. (363 aa)
	lrrc8a	Leucine rich repeat containing 8 VRAC subunit Aa. (796 aa)
	ENSCSEP00000024197	Si:ch211-106h11.1. (783 aa)
	LOC103394884	Fibronectin type-III domain-containing protein. (682 aa)
	Lrrc10	Uncharacterized protein. (254 aa)
	LOC103383017	Uncharacterized protein. (745 aa)
	LOC103390151	Unc-5 netrin receptor C. (955 aa)
	LOC103396121	LRRCT domain-containing protein. (524 aa)
	lrrc8d	Leucine rich repeat containing 8 VRAC subunit Da. (844 aa)
	LOC103398318	Uncharacterized protein. (521 aa)
	ENSCSEP00000028182	Teneurin transmembrane protein 1. (2479 aa)
	LOC103391380	Teneurin transmembrane protein 2. (2477 aa)
	flrt2	Fibronectin leucine rich transmembrane protein 2. (664 aa)
	ENSCSEP00000031107	Si:ch211-166i24.1. (223 aa)
	ENSCSEP00000032661	Uncharacterized protein. (365 aa)

Your Current Organism:

Cynoglossus semilaevis

NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADGRL3	ENSCSEP00000000089	ENSCSEP00000010067	ENSCSEP00000000089	Adhesion G protein-coupled receptor L3; Belongs to the G-protein coupled receptor 2 family.	Leucine rich repeat and fibronectin type III domain containing 5a.	0.631
ADGRL3	ENSCSEP00000006812	ENSCSEP00000010067	ENSCSEP00000006812	Adhesion G protein-coupled receptor L3; Belongs to the G-protein coupled receptor 2 family.	Ig-like domain-containing protein.	0.635
ADGRL3	ENSCSEP00000008618	ENSCSEP00000010067	ENSCSEP00000008618	Adhesion G protein-coupled receptor L3; Belongs to the G-protein coupled receptor 2 family.	Teneurin transmembrane protein 4.	0.989
ADGRL3	ENSCSEP00000011565	ENSCSEP00000010067	ENSCSEP00000011565	Adhesion G protein-coupled receptor L3; Belongs to the G-protein coupled receptor 2 family.	Leucine rich repeat containing 18a.	0.631
ADGRL3	ENSCSEP00000016953	ENSCSEP00000010067	ENSCSEP00000016953	Adhesion G protein-coupled receptor L3; Belongs to the G-protein coupled receptor 2 family.	Teneurin transmembrane protein 3.	0.989
ADGRL3	ENSCSEP00000024197	ENSCSEP00000010067	ENSCSEP00000024197	Adhesion G protein-coupled receptor L3; Belongs to the G-protein coupled receptor 2 family.	Si:ch211-106h11.1.	0.631
ADGRL3	ENSCSEP00000028182	ENSCSEP00000010067	ENSCSEP00000028182	Adhesion G protein-coupled receptor L3; Belongs to the G-protein coupled receptor 2 family.	Teneurin transmembrane protein 1.	0.992
ADGRL3	ENSCSEP00000031107	ENSCSEP00000010067	ENSCSEP00000031107	Adhesion G protein-coupled receptor L3; Belongs to the G-protein coupled receptor 2 family.	Si:ch211-166i24.1.	0.989
ADGRL3	ENSCSEP00000032661	ENSCSEP00000010067	ENSCSEP00000032661	Adhesion G protein-coupled receptor L3; Belongs to the G-protein coupled receptor 2 family.	Uncharacterized protein.	0.631
ADGRL3	LOC103377019	ENSCSEP00000010067	ENSCSEP00000018050	Adhesion G protein-coupled receptor L3; Belongs to the G-protein coupled receptor 2 family.	Negative regulator of reactive oxygen species.	0.631
ADGRL3	LOC103377856	ENSCSEP00000010067	ENSCSEP00000008864	Adhesion G protein-coupled receptor L3; Belongs to the G-protein coupled receptor 2 family.	Uncharacterized protein.	0.631
ADGRL3	LOC103383017	ENSCSEP00000010067	ENSCSEP00000025315	Adhesion G protein-coupled receptor L3; Belongs to the G-protein coupled receptor 2 family.	Uncharacterized protein.	0.631
ADGRL3	LOC103384172	ENSCSEP00000010067	ENSCSEP00000021606	Adhesion G protein-coupled receptor L3; Belongs to the G-protein coupled receptor 2 family.	Si:zfos-323e3.4.	0.631
ADGRL3	LOC103389258	ENSCSEP00000010067	ENSCSEP00000001686	Adhesion G protein-coupled receptor L3; Belongs to the G-protein coupled receptor 2 family.	PDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family.	0.989
ADGRL3	LOC103390151	ENSCSEP00000010067	ENSCSEP00000026496	Adhesion G protein-coupled receptor L3; Belongs to the G-protein coupled receptor 2 family.	Unc-5 netrin receptor C.	0.992
ADGRL3	LOC103390675	ENSCSEP00000010067	ENSCSEP00000005803	Adhesion G protein-coupled receptor L3; Belongs to the G-protein coupled receptor 2 family.	Si:dkey-237h12.3.	0.989
ADGRL3	LOC103390821	ENSCSEP00000010067	ENSCSEP00000009150	Adhesion G protein-coupled receptor L3; Belongs to the G-protein coupled receptor 2 family.	Fibronectin leucine rich transmembrane protein 1b.	0.686
ADGRL3	LOC103391380	ENSCSEP00000010067	ENSCSEP00000029106	Adhesion G protein-coupled receptor L3; Belongs to the G-protein coupled receptor 2 family.	Teneurin transmembrane protein 2.	0.989
ADGRL3	LOC103394884	ENSCSEP00000010067	ENSCSEP00000024200	Adhesion G protein-coupled receptor L3; Belongs to the G-protein coupled receptor 2 family.	Fibronectin type-III domain-containing protein.	0.686
ADGRL3	LOC103396121	ENSCSEP00000010067	ENSCSEP00000027068	Adhesion G protein-coupled receptor L3; Belongs to the G-protein coupled receptor 2 family.	LRRCT domain-containing protein.	0.631