18 items (Cynoglossus semilaevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Cetp	Cholesteryl ester transfer protein, plasma. (421 aa)
	apof	Apolipoprotein F. (434 aa)
	LOC103383597	Protein disulfide-isomerase. (570 aa)
	mttp	Microsomal triglyceride transfer protein. (887 aa)
	scarb1	Scavenger receptor class B, member 1; Belongs to the CD36 family. (507 aa)
	LOC103392855	Vitellogenin 3, phosvitinless. (1271 aa)
	LOC107989939	Apolipoprotein A-IV a. (267 aa)
	LOC103393985	Apolipoprotein Ea. (253 aa)
	LOC103392297	Uncharacterized protein. (1651 aa)
	ENSCSEP00000020503	Uncharacterized protein. (1571 aa)
	ENSCSEP00000023616	Uncharacterized protein. (78 aa)
	LOC103389012	Apolipoprotein Eb. (346 aa)
	LOC103389010	Uncharacterized protein. (255 aa)
	LOC103389009	Uncharacterized protein. (220 aa)
	apob	Apolipoprotein Ba. (4379 aa)
	pltp	Phospholipid transfer protein. (480 aa)
	ENSCSEP00000032636	Vitellogenin domain-containing protein. (722 aa)
	LOC103380907	Apolipoprotein Bb, tandem duplicate 2. (3802 aa)

Your Current Organism:

Cynoglossus semilaevis

NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cetp	ENSCSEP00000032636	ENSCSEP00000000668	ENSCSEP00000032636	Cholesteryl ester transfer protein, plasma.	Vitellogenin domain-containing protein.	0.727
Cetp	LOC103380907	ENSCSEP00000000668	ENSCSEP00000032638	Cholesteryl ester transfer protein, plasma.	Apolipoprotein Bb, tandem duplicate 2.	0.790
Cetp	LOC103389009	ENSCSEP00000000668	ENSCSEP00000023647	Cholesteryl ester transfer protein, plasma.	Uncharacterized protein.	0.655
Cetp	LOC103389010	ENSCSEP00000000668	ENSCSEP00000023634	Cholesteryl ester transfer protein, plasma.	Uncharacterized protein.	0.655
Cetp	LOC103389012	ENSCSEP00000000668	ENSCSEP00000023628	Cholesteryl ester transfer protein, plasma.	Apolipoprotein Eb.	0.594
Cetp	LOC107989939	ENSCSEP00000000668	ENSCSEP00000015505	Cholesteryl ester transfer protein, plasma.	Apolipoprotein A-IV a.	0.655
Cetp	apob	ENSCSEP00000000668	ENSCSEP00000024711	Cholesteryl ester transfer protein, plasma.	Apolipoprotein Ba.	0.790
Cetp	apof	ENSCSEP00000000668	ENSCSEP00000005374	Cholesteryl ester transfer protein, plasma.	Apolipoprotein F.	0.843
Cetp	scarb1	ENSCSEP00000000668	ENSCSEP00000011659	Cholesteryl ester transfer protein, plasma.	Scavenger receptor class B, member 1; Belongs to the CD36 family.	0.472
ENSCSEP00000020503	ENSCSEP00000023616	ENSCSEP00000020503	ENSCSEP00000023616	Uncharacterized protein.	Uncharacterized protein.	0.514
ENSCSEP00000020503	LOC103389009	ENSCSEP00000020503	ENSCSEP00000023647	Uncharacterized protein.	Uncharacterized protein.	0.718
ENSCSEP00000020503	LOC103389010	ENSCSEP00000020503	ENSCSEP00000023634	Uncharacterized protein.	Uncharacterized protein.	0.718
ENSCSEP00000020503	LOC103389012	ENSCSEP00000020503	ENSCSEP00000023628	Uncharacterized protein.	Apolipoprotein Eb.	0.618
ENSCSEP00000020503	LOC103393985	ENSCSEP00000020503	ENSCSEP00000015525	Uncharacterized protein.	Apolipoprotein Ea.	0.618
ENSCSEP00000020503	LOC107989939	ENSCSEP00000020503	ENSCSEP00000015505	Uncharacterized protein.	Apolipoprotein A-IV a.	0.718
ENSCSEP00000020503	apof	ENSCSEP00000020503	ENSCSEP00000005374	Uncharacterized protein.	Apolipoprotein F.	0.568
ENSCSEP00000020503	mttp	ENSCSEP00000020503	ENSCSEP00000006681	Uncharacterized protein.	Microsomal triglyceride transfer protein.	0.823
ENSCSEP00000020503	scarb1	ENSCSEP00000020503	ENSCSEP00000011659	Uncharacterized protein.	Scavenger receptor class B, member 1; Belongs to the CD36 family.	0.406
ENSCSEP00000023616	ENSCSEP00000020503	ENSCSEP00000023616	ENSCSEP00000020503	Uncharacterized protein.	Uncharacterized protein.	0.514
ENSCSEP00000023616	ENSCSEP00000032636	ENSCSEP00000023616	ENSCSEP00000032636	Uncharacterized protein.	Vitellogenin domain-containing protein.	0.514