(6 nodes) Mixed, incl. Organic solute transporter Ostalpha, and Nuclear receptor subfamily 0 group B member 1/2 network (Cynoglossus semilaevis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSCSEP00000004975	Uncharacterized protein. (415 aa)
	LOC103384850	Si:dkey-16n15.6. (415 aa)
	LOC103388423	Homeobox A13b. (293 aa)
	nr0b2	Nuclear receptor subfamily 0, group B, member 2a. (257 aa)
	LOC103395713	Uncharacterized protein. (366 aa)
	LOC103397689	Nuclear receptor subfamily 5, group A, member 1a. (485 aa)

Your Current Organism:

Cynoglossus semilaevis

NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103384850	nr0b2	ENSCSEP00000007124	ENSCSEP00000008237	Si:dkey-16n15.6.	Nuclear receptor subfamily 0, group B, member 2a.	0.408
LOC103388423	nr0b2	ENSCSEP00000007424	ENSCSEP00000008237	Homeobox A13b.	Nuclear receptor subfamily 0, group B, member 2a.	0.478
LOC103395713	nr0b2	ENSCSEP00000013828	ENSCSEP00000008237	Uncharacterized protein.	Nuclear receptor subfamily 0, group B, member 2a.	0.508
LOC103397689	nr0b2	ENSCSEP00000026946	ENSCSEP00000008237	Nuclear receptor subfamily 5, group A, member 1a.	Nuclear receptor subfamily 0, group B, member 2a.	0.826
nr0b2	LOC103384850	ENSCSEP00000008237	ENSCSEP00000007124	Nuclear receptor subfamily 0, group B, member 2a.	Si:dkey-16n15.6.	0.408
nr0b2	LOC103388423	ENSCSEP00000008237	ENSCSEP00000007424	Nuclear receptor subfamily 0, group B, member 2a.	Homeobox A13b.	0.478
nr0b2	LOC103395713	ENSCSEP00000008237	ENSCSEP00000013828	Nuclear receptor subfamily 0, group B, member 2a.	Uncharacterized protein.	0.508
nr0b2	LOC103397689	ENSCSEP00000008237	ENSCSEP00000026946	Nuclear receptor subfamily 0, group B, member 2a.	Nuclear receptor subfamily 5, group A, member 1a.	0.826