(10 nodes) Mixed, incl. NOD2, winged helix domain, and Double-sex mab3 related transcription factor 1 network (Cynoglossus semilaevis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103381311	Uncharacterized protein. (946 aa)
	ENSCSEP00000009522	Uncharacterized protein. (964 aa)
	LOC103399164	Uncharacterized protein. (217 aa)
	ENSCSEP00000011781	Pyrin domain-containing protein. (96 aa)
	LOC103391507	Uncharacterized protein. (338 aa)
	LOC103389831	Uncharacterized protein. (1127 aa)
	ENSCSEP00000024899	Uncharacterized protein. (989 aa)
	ENSCSEP00000027033	Uncharacterized protein. (106 aa)
	LOC103393207	Si:ch211-120g10.1. (401 aa)
	LOC103382061	Zgc:194990. (390 aa)

Your Current Organism:

Cynoglossus semilaevis

NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCSEP00000011781	LOC103382061	ENSCSEP00000011781	ENSCSEP00000031537	Pyrin domain-containing protein.	Zgc:194990.	0.403
ENSCSEP00000027033	LOC103382061	ENSCSEP00000027033	ENSCSEP00000031537	Uncharacterized protein.	Zgc:194990.	0.514
ENSCSEP00000027033	LOC103393207	ENSCSEP00000027033	ENSCSEP00000027781	Uncharacterized protein.	Si:ch211-120g10.1.	0.452
LOC103381311	LOC103382061	ENSCSEP00000008472	ENSCSEP00000031537	Uncharacterized protein.	Zgc:194990.	0.417
LOC103382061	ENSCSEP00000011781	ENSCSEP00000031537	ENSCSEP00000011781	Zgc:194990.	Pyrin domain-containing protein.	0.403
LOC103382061	ENSCSEP00000027033	ENSCSEP00000031537	ENSCSEP00000027033	Zgc:194990.	Uncharacterized protein.	0.514
LOC103382061	LOC103381311	ENSCSEP00000031537	ENSCSEP00000008472	Zgc:194990.	Uncharacterized protein.	0.417
LOC103382061	LOC103389831	ENSCSEP00000031537	ENSCSEP00000022823	Zgc:194990.	Uncharacterized protein.	0.414
LOC103389831	LOC103382061	ENSCSEP00000022823	ENSCSEP00000031537	Uncharacterized protein.	Zgc:194990.	0.414
LOC103393207	ENSCSEP00000027033	ENSCSEP00000027781	ENSCSEP00000027033	Si:ch211-120g10.1.	Uncharacterized protein.	0.452