(5 nodes) Nuclear cap binding complex, and SERRATE/Ars2 network (Cynoglossus semilaevis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103389311	Uncharacterized protein. (819 aa)
	LOC103381306	RNA binding motif protein 25a. (806 aa)
	NCBP1	Nuclear cap binding protein subunit 1. (822 aa)
	luc7l	LUC7-like (S. cerevisiae). (359 aa)
	ncbp2	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (189 aa)

Your Current Organism:

Cynoglossus semilaevis

NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103381306	LOC103389311	ENSCSEP00000014680	ENSCSEP00000008177	RNA binding motif protein 25a.	Uncharacterized protein.	0.623
LOC103381306	NCBP1	ENSCSEP00000014680	ENSCSEP00000019395	RNA binding motif protein 25a.	Nuclear cap binding protein subunit 1.	0.914
LOC103381306	luc7l	ENSCSEP00000014680	ENSCSEP00000019630	RNA binding motif protein 25a.	LUC7-like (S. cerevisiae).	0.938
LOC103381306	ncbp2	ENSCSEP00000014680	ENSCSEP00000030161	RNA binding motif protein 25a.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.892
LOC103389311	LOC103381306	ENSCSEP00000008177	ENSCSEP00000014680	Uncharacterized protein.	RNA binding motif protein 25a.	0.623
LOC103389311	NCBP1	ENSCSEP00000008177	ENSCSEP00000019395	Uncharacterized protein.	Nuclear cap binding protein subunit 1.	0.973
LOC103389311	luc7l	ENSCSEP00000008177	ENSCSEP00000019630	Uncharacterized protein.	LUC7-like (S. cerevisiae).	0.623
LOC103389311	ncbp2	ENSCSEP00000008177	ENSCSEP00000030161	Uncharacterized protein.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.966
NCBP1	LOC103381306	ENSCSEP00000019395	ENSCSEP00000014680	Nuclear cap binding protein subunit 1.	RNA binding motif protein 25a.	0.914
NCBP1	LOC103389311	ENSCSEP00000019395	ENSCSEP00000008177	Nuclear cap binding protein subunit 1.	Uncharacterized protein.	0.973
NCBP1	luc7l	ENSCSEP00000019395	ENSCSEP00000019630	Nuclear cap binding protein subunit 1.	LUC7-like (S. cerevisiae).	0.831
NCBP1	ncbp2	ENSCSEP00000019395	ENSCSEP00000030161	Nuclear cap binding protein subunit 1.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.999
luc7l	LOC103381306	ENSCSEP00000019630	ENSCSEP00000014680	LUC7-like (S. cerevisiae).	RNA binding motif protein 25a.	0.938
luc7l	LOC103389311	ENSCSEP00000019630	ENSCSEP00000008177	LUC7-like (S. cerevisiae).	Uncharacterized protein.	0.623
luc7l	NCBP1	ENSCSEP00000019630	ENSCSEP00000019395	LUC7-like (S. cerevisiae).	Nuclear cap binding protein subunit 1.	0.831
luc7l	ncbp2	ENSCSEP00000019630	ENSCSEP00000030161	LUC7-like (S. cerevisiae).	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.884
ncbp2	LOC103381306	ENSCSEP00000030161	ENSCSEP00000014680	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	RNA binding motif protein 25a.	0.892
ncbp2	LOC103389311	ENSCSEP00000030161	ENSCSEP00000008177	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	Uncharacterized protein.	0.966
ncbp2	NCBP1	ENSCSEP00000030161	ENSCSEP00000019395	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	Nuclear cap binding protein subunit 1.	0.999
ncbp2	luc7l	ENSCSEP00000030161	ENSCSEP00000019630	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	LUC7-like (S. cerevisiae).	0.884