12 items (Cynoglossus semilaevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103385776	RRM domain-containing protein. (168 aa)
	SRSF3	Serine and arginine rich splicing factor 3. (204 aa)
	LOC103381207	Serine and arginine rich splicing factor 5b. (314 aa)
	nxf1	Zgc:153681. (651 aa)
	Srsf7	Serine and arginine rich splicing factor 7a. (140 aa)
	srsf10	RRM domain-containing protein. (298 aa)
	ENSCSEP00000015502	Uncharacterized protein. (262 aa)
	tra2a	Transformer 2 alpha homolog. (301 aa)
	srsf2	Serine and arginine rich splicing factor 2a. (217 aa)
	LOC103378294	Serine and arginine rich splicing factor 1a. (250 aa)
	LOC103390134	Serine and arginine rich splicing factor 9. (250 aa)
	LOC103393202	Aly/REF export factor. (270 aa)

Your Current Organism:

Cynoglossus semilaevis

NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCSEP00000015502	LOC103381207	ENSCSEP00000015502	ENSCSEP00000005886	Uncharacterized protein.	Serine and arginine rich splicing factor 5b.	0.686
ENSCSEP00000015502	LOC103385776	ENSCSEP00000015502	ENSCSEP00000001946	Uncharacterized protein.	RRM domain-containing protein.	0.893
ENSCSEP00000015502	LOC103390134	ENSCSEP00000015502	ENSCSEP00000024526	Uncharacterized protein.	Serine and arginine rich splicing factor 9.	0.848
ENSCSEP00000015502	LOC103393202	ENSCSEP00000015502	ENSCSEP00000027843	Uncharacterized protein.	Aly/REF export factor.	0.871
ENSCSEP00000015502	SRSF3	ENSCSEP00000015502	ENSCSEP00000003464	Uncharacterized protein.	Serine and arginine rich splicing factor 3.	0.893
ENSCSEP00000015502	Srsf7	ENSCSEP00000015502	ENSCSEP00000009939	Uncharacterized protein.	Serine and arginine rich splicing factor 7a.	0.963
ENSCSEP00000015502	nxf1	ENSCSEP00000015502	ENSCSEP00000009015	Uncharacterized protein.	Zgc:153681.	0.964
ENSCSEP00000015502	srsf10	ENSCSEP00000015502	ENSCSEP00000012687	Uncharacterized protein.	RRM domain-containing protein.	0.959
ENSCSEP00000015502	srsf2	ENSCSEP00000015502	ENSCSEP00000020952	Uncharacterized protein.	Serine and arginine rich splicing factor 2a.	0.943
ENSCSEP00000015502	tra2a	ENSCSEP00000015502	ENSCSEP00000019042	Uncharacterized protein.	Transformer 2 alpha homolog.	0.844
LOC103378294	LOC103381207	ENSCSEP00000022407	ENSCSEP00000005886	Serine and arginine rich splicing factor 1a.	Serine and arginine rich splicing factor 5b.	0.686
LOC103378294	LOC103385776	ENSCSEP00000022407	ENSCSEP00000001946	Serine and arginine rich splicing factor 1a.	RRM domain-containing protein.	0.893
LOC103378294	LOC103390134	ENSCSEP00000022407	ENSCSEP00000024526	Serine and arginine rich splicing factor 1a.	Serine and arginine rich splicing factor 9.	0.848
LOC103378294	LOC103393202	ENSCSEP00000022407	ENSCSEP00000027843	Serine and arginine rich splicing factor 1a.	Aly/REF export factor.	0.871
LOC103378294	SRSF3	ENSCSEP00000022407	ENSCSEP00000003464	Serine and arginine rich splicing factor 1a.	Serine and arginine rich splicing factor 3.	0.893
LOC103378294	Srsf7	ENSCSEP00000022407	ENSCSEP00000009939	Serine and arginine rich splicing factor 1a.	Serine and arginine rich splicing factor 7a.	0.963
LOC103378294	nxf1	ENSCSEP00000022407	ENSCSEP00000009015	Serine and arginine rich splicing factor 1a.	Zgc:153681.	0.964
LOC103378294	srsf10	ENSCSEP00000022407	ENSCSEP00000012687	Serine and arginine rich splicing factor 1a.	RRM domain-containing protein.	0.959
LOC103378294	srsf2	ENSCSEP00000022407	ENSCSEP00000020952	Serine and arginine rich splicing factor 1a.	Serine and arginine rich splicing factor 2a.	0.939
LOC103378294	tra2a	ENSCSEP00000022407	ENSCSEP00000019042	Serine and arginine rich splicing factor 1a.	Transformer 2 alpha homolog.	0.830