STRINGSTRING
noct noct cnot6l cnot6l usb1 usb1 LOC103390988 LOC103390988 LOC103397020 LOC103397020 exd2 exd2 dis3l dis3l rexo2 rexo2 eri1 eri1 exosc10 exosc10 LOC103381275 LOC103381275 dis3 dis3 dis3l2 dis3l2 cnot8 cnot8 toe1 toe1 pan2 pan2 pde12 pde12 LOC103391308 LOC103391308 parn parn eri2 eri2 PNPT1 PNPT1 angel1 angel1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
noctNocturnin a. (384 aa)
cnot6lCCR4-NOT transcription complex, subunit 6-like. (553 aa)
usb1U6 snRNA phosphodiesterase; Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA; Belongs to the 2H phosphoesterase superfamily. USB1 family. (276 aa)
LOC103390988CCR4-NOT transcription complex, subunit 6a. (559 aa)
LOC103397020Endo/exonuclease/phosphatase domain-containing protein. (426 aa)
exd2Exonuclease 3'-5' domain containing 2. (728 aa)
dis3lDIS3 like exosome 3'-5' exoribonuclease; Belongs to the RNR ribonuclease family. (1047 aa)
rexo2Small fragment nuclease. (277 aa)
eri1Exoribonuclease 1. (340 aa)
exosc10Exosome component 10. (896 aa)
LOC103381275Angel homolog 2 (Drosophila). (553 aa)
dis3DIS3 exosome endoribonuclease and 3'-5' exoribonuclease; Belongs to the RNR ribonuclease family. (948 aa)
dis3l2DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of both mRNAs and miRNAs that have been polyuridylated by a terminal uridylyltransferase. Essential for correct mitosis, and negatively regulates cell proliferation. Belongs to the RNR ribonuclease family. DIS3L2 subfamily. (1034 aa)
cnot8CCR4-NOT transcription complex, subunit 8. (286 aa)
toe1Target of EGR1, exonuclease. (527 aa)
pan2PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent [...] (1195 aa)
pde12Phosphodiesterase 12. (558 aa)
LOC103391308CCR4-NOT transcription complex, subunit 7. (286 aa)
parnPoly(A)-specific ribonuclease (deadenylation nuclease). (692 aa)
eri2ERI1 exoribonuclease family member 2. (727 aa)
PNPT1Polyribonucleotide nucleotidyltransferase 1. (703 aa)
angel1Angel homolog 1 (Drosophila). (683 aa)
Your Current Organism:
Cynoglossus semilaevis
NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole
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