STRINGSTRING
rbm8a rbm8a pym1 pym1 eif4a3 eif4a3 pnrc2 pnrc2 ctif ctif smg8 smg8 ncbp2 ncbp2 LOC103398864 LOC103398864 dcp2 dcp2 UPF1 UPF1 smg5 smg5 helz2 helz2 smg6 smg6 NCBP1 NCBP1 smg1 smg1 skiv2l skiv2l casc3 casc3 Dcp1b Dcp1b Smg7 Smg7 etf1 etf1 smg9 smg9 upf3a upf3a UPF2 UPF2 ENSCSEP00000005425 ENSCSEP00000005425 nbas nbas upf3b upf3b magoh magoh ENSCSEP00000000582 ENSCSEP00000000582
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rbm8aRNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (175 aa)
pym1PYM homolog 1, exon junction complex associated factor. (201 aa)
eif4a3Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (406 aa)
pnrc2Proline-rich nuclear receptor coactivator 2. (157 aa)
ctifCBP80/20-dependent translation initiation factor. (704 aa)
smg8SMG8 nonsense mediated mRNA decay factor. (963 aa)
ncbp2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (189 aa)
LOC103398864Uncharacterized protein. (1075 aa)
dcp2Decapping mRNA 2. (390 aa)
UPF1UPF1 RNA helicase and ATPase. (1098 aa)
smg5SMG5 nonsense mediated mRNA decay factor. (1120 aa)
helz2Uncharacterized protein. (2846 aa)
smg6SMG6 nonsense mediated mRNA decay factor. (1637 aa)
NCBP1Nuclear cap binding protein subunit 1. (822 aa)
smg1SMG1 nonsense mediated mRNA decay associated PI3K related kinase; Belongs to the PI3/PI4-kinase family. (3421 aa)
skiv2lSKI2 homolog, superkiller viralicidic activity 2-like. (1234 aa)
casc3Casc3 exon junction complex subunit. (815 aa)
Dcp1bDecapping mRNA 1B. (646 aa)
Smg7EST1 domain-containing protein. (176 aa)
etf1Eukaryotic translation termination factor 1b. (443 aa)
smg9SMG9 nonsense mediated mRNA decay factor. (508 aa)
upf3aUPF3A regulator of nonsense mediated mRNA decay. (459 aa)
UPF2UPF2 regulator of nonsense mediated mRNA decay. (1227 aa)
ENSCSEP00000005425MIF4G domain-containing protein. (343 aa)
nbasNeuroblastoma amplified sequence. (2241 aa)
upf3bUPF3B regulator of nonsense mediated mRNA decay. (476 aa)
magohMago homolog, exon junction complex subunit. (134 aa)
ENSCSEP00000000582Uncharacterized protein. (140 aa)
Your Current Organism:
Cynoglossus semilaevis
NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole
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