STRINGSTRING
c1d c1d eri2 eri2 wdr12 wdr12 gnl3 gnl3 exosc10 exosc10 exosc3 exosc3 eri1 eri1 rpf1 rpf1 mak16 mak16 rrp15 rrp15 exosc4 exosc4 exosc7 exosc7 urb1 urb1 nsa2 nsa2 ENSCSEP00000020864 ENSCSEP00000020864 ftsj3 ftsj3 exosc9 exosc9 kri1 kri1 rrs1 rrs1 rpp40 rpp40 LOC103390172 LOC103390172 ENSCSEP00000025902 ENSCSEP00000025902 Abt1 Abt1 nol9 nol9 pes1 pes1 bop1 bop1 nop9 nop9 mtrex mtrex exosc8 exosc8 eif6 eif6 mphosph6 mphosph6
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
c1dC1D nuclear receptor corepressor. (155 aa)
eri2ERI1 exoribonuclease family member 2. (727 aa)
wdr12Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (423 aa)
gnl3Guanine nucleotide binding protein-like 3 (nucleolar). (547 aa)
exosc10Exosome component 10. (896 aa)
exosc3Exosome component 3. (244 aa)
eri1Exoribonuclease 1. (340 aa)
rpf1Ribosome production factor 1 homolog. (379 aa)
mak16Protein MAK16 homolog; Belongs to the MAK16 family. (290 aa)
rrp15Ribosomal RNA processing 15 homolog. (252 aa)
exosc4Exosome component 4. (245 aa)
exosc7Exosome component 7. (291 aa)
urb1URB1 ribosome biogenesis homolog. (2218 aa)
nsa2NSA2 ribosome biogenesis homolog (S. cerevisiae). (242 aa)
ENSCSEP00000020864Protein kinase, DNA-activated, catalytic subunit; Belongs to the PI3/PI4-kinase family. (3778 aa)
ftsj3pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (867 aa)
exosc9Exosome component 9. (400 aa)
kri1KRI1 homolog. (752 aa)
rrs1Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (313 aa)
rpp40Uncharacterized protein. (348 aa)
LOC103390172Exosome component 2. (291 aa)
ENSCSEP00000025902Exosome component 2. (135 aa)
Abt1Activator of basal transcription 1. (380 aa)
nol9Nucleolar protein 9. (701 aa)
pes1Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (588 aa)
bop1Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (695 aa)
nop9Uncharacterized protein. (623 aa)
mtrexMtr4 exosome RNA helicase. (1053 aa)
exosc8Exosome component 8. (277 aa)
eif6Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis. (259 aa)
mphosph6M-phase phosphoprotein 6. (161 aa)
Your Current Organism:
Cynoglossus semilaevis
NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole
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