20 items (Cynoglossus semilaevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	polr3b	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1136 aa)
	POLR2E	RNA polymerase II subunit E. (229 aa)
	polr2f	Polymerase (RNA) II (DNA directed) polypeptide F. (127 aa)
	polr2c	Polymerase (RNA) II (DNA directed) polypeptide C. (275 aa)
	polr2l	Polymerase (RNA) II (DNA directed) polypeptide L. (67 aa)
	polr2a	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1965 aa)
	polrmt	DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family. (1299 aa)
	primpol	Primase and polymerase (DNA-directed). (491 aa)
	polr2b	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
	polr3h	Polymerase (RNA) III (DNA directed) polypeptide H. (212 aa)
	prim1	DNA primase; Belongs to the eukaryotic-type primase small subunit family. (396 aa)
	polr2j	Polymerase (RNA) II (DNA directed) polypeptide J. (117 aa)
	polr1a	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1628 aa)
	crcp	Calcitonin gene-related peptide-receptor component protein. (148 aa)
	LOC103391314	RNA polymerase I and III subunit D. (146 aa)
	Polr1c	RNA polymerase I and III subunit C. (346 aa)
	polr2k	Polymerase (RNA) II (DNA directed) polypeptide K. (58 aa)
	polr3a	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1390 aa)
	twistnb	SHS2_Rpb7-N domain-containing protein. (373 aa)
	polr1b	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1134 aa)

Your Current Organism:

Cynoglossus semilaevis

NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103391314	POLR2E	ENSCSEP00000028542	ENSCSEP00000011072	RNA polymerase I and III subunit D.	RNA polymerase II subunit E.	0.999
LOC103391314	Polr1c	ENSCSEP00000028542	ENSCSEP00000028317	RNA polymerase I and III subunit D.	RNA polymerase I and III subunit C.	0.999
LOC103391314	crcp	ENSCSEP00000028542	ENSCSEP00000029373	RNA polymerase I and III subunit D.	Calcitonin gene-related peptide-receptor component protein.	0.995
LOC103391314	polr1a	ENSCSEP00000028542	ENSCSEP00000031564	RNA polymerase I and III subunit D.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.998
LOC103391314	polr1b	ENSCSEP00000028542	ENSCSEP00000013295	RNA polymerase I and III subunit D.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.995
LOC103391314	polr2a	ENSCSEP00000028542	ENSCSEP00000004081	RNA polymerase I and III subunit D.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.456
LOC103391314	polr2b	ENSCSEP00000028542	ENSCSEP00000008316	RNA polymerase I and III subunit D.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.969
LOC103391314	polr2c	ENSCSEP00000028542	ENSCSEP00000002623	RNA polymerase I and III subunit D.	Polymerase (RNA) II (DNA directed) polypeptide C.	0.997
LOC103391314	polr2f	ENSCSEP00000028542	ENSCSEP00000010669	RNA polymerase I and III subunit D.	Polymerase (RNA) II (DNA directed) polypeptide F.	0.999
LOC103391314	polr2j	ENSCSEP00000028542	ENSCSEP00000031748	RNA polymerase I and III subunit D.	Polymerase (RNA) II (DNA directed) polypeptide J.	0.777
LOC103391314	polr2k	ENSCSEP00000028542	ENSCSEP00000027187	RNA polymerase I and III subunit D.	Polymerase (RNA) II (DNA directed) polypeptide K.	0.998
LOC103391314	polr2l	ENSCSEP00000028542	ENSCSEP00000002979	RNA polymerase I and III subunit D.	Polymerase (RNA) II (DNA directed) polypeptide L.	0.999
LOC103391314	polr3a	ENSCSEP00000028542	ENSCSEP00000026108	RNA polymerase I and III subunit D.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.997
LOC103391314	polr3b	ENSCSEP00000028542	ENSCSEP00000009251	RNA polymerase I and III subunit D.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.996
LOC103391314	polr3h	ENSCSEP00000028542	ENSCSEP00000010469	RNA polymerase I and III subunit D.	Polymerase (RNA) III (DNA directed) polypeptide H.	0.998
LOC103391314	twistnb	ENSCSEP00000028542	ENSCSEP00000013971	RNA polymerase I and III subunit D.	SHS2_Rpb7-N domain-containing protein.	0.998
POLR2E	LOC103391314	ENSCSEP00000011072	ENSCSEP00000028542	RNA polymerase II subunit E.	RNA polymerase I and III subunit D.	0.999
POLR2E	Polr1c	ENSCSEP00000011072	ENSCSEP00000028317	RNA polymerase II subunit E.	RNA polymerase I and III subunit C.	0.999
POLR2E	crcp	ENSCSEP00000011072	ENSCSEP00000029373	RNA polymerase II subunit E.	Calcitonin gene-related peptide-receptor component protein.	0.997
POLR2E	polr1a	ENSCSEP00000011072	ENSCSEP00000031564	RNA polymerase II subunit E.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999