STRINGSTRING
eri1 eri1 tfb1m tfb1m nsun5 nsun5 wdr18 wdr18 lsm6 lsm6 utp4 utp4 c1d c1d rrp9 rrp9 rcl1 rcl1 fcf1 fcf1 ENSCSEP00000001046 ENSCSEP00000001046 rrnad1 rrnad1 LOC103389228 LOC103389228 LOC103383370 LOC103383370 RRP36 RRP36 ENSCSEP00000001637 ENSCSEP00000001637 esf1 esf1 mettl15 mettl15 mphosph10 mphosph10 drosha drosha tex10 tex10 mrpl44 mrpl44 rpp38 rpp38 rpp30 rpp30 rpusd2 rpusd2 sart1 sart1 eri2 eri2 ENSCSEP00000003172 ENSCSEP00000003172 bysl bysl rps25 rps25 ENSCSEP00000003650 ENSCSEP00000003650 Heatr1 Heatr1 bms1 bms1 pop4 pop4 LOC103385946 LOC103385946 gar1 gar1 LOC103387149 LOC103387149 wdr12 wdr12 zcchc4 zcchc4 trmt2b trmt2b gnl3 gnl3 gemin4 gemin4 exosc10 exosc10 wdr55 wdr55 exosc3 exosc3 trmt112 trmt112 ENSCSEP00000008985 ENSCSEP00000008985 ercc2 ercc2 Rpusd4 Rpusd4 nhp2 nhp2 Pelp1 Pelp1 fdxacb1 fdxacb1 rrp7a rrp7a LOC103385095 LOC103385095 Rrp8 Rrp8 gtpbp4 gtpbp4 LOC103399497 LOC103399497 wbp11 wbp11 ddx47 ddx47 ENSCSEP00000011985 ENSCSEP00000011985 rrp12 rrp12 ENSCSEP00000012296 ENSCSEP00000012296 npm3 npm3 utp18 utp18 TFB2M TFB2M LOC103396928 LOC103396928 ddx56 ddx56 lyar lyar ngdn ngdn rpf1 rpf1 UTP14C UTP14C wdr3 wdr3 LOC103397472 LOC103397472 ddx52 ddx52 rpl7 rpl7 Nol11 Nol11 ENSCSEP00000015649 ENSCSEP00000015649 mak16 mak16 fbl fbl mrps11 mrps11 rrp15 rrp15 pdcd11 pdcd11 exosc4 exosc4 LOC103383875 LOC103383875 LOC103397057 LOC103397057 exosc7 exosc7 pop5 pop5 utp23 utp23 mettl5 mettl5 srfbp1 srfbp1 nsun4 nsun4 tsr3 tsr3 dkc1 dkc1 urb1 urb1 Nol8 Nol8 tsr1 tsr1 nat10 nat10 nsa2 nsa2 Pop7 Pop7 ENSCSEP00000020864 ENSCSEP00000020864 ftsj3 ftsj3 mrm3 mrm3 utp6 utp6 dcaf13 dcaf13 ddx21 ddx21 mrpl1 mrpl1 riok2 riok2 exosc6 exosc6 Mrm1 Mrm1 exosc9 exosc9 kri1 kri1 rrs1 rrs1 utp20 utp20 nop53 nop53 rpp40 rpp40 ENSCSEP00000023551 ENSCSEP00000023551 ddx18 ddx18 pih1d2 pih1d2 nifk nifk wdr74 wdr74 pih1d1 pih1d1 tbl3 tbl3 LOC103395995 LOC103395995 rpf2 rpf2 frg1 frg1 ddx51 ddx51 imp4 imp4 utp25 utp25 ddx49 ddx49 znhit3 znhit3 ybey ybey wdr43 wdr43 trmt61b trmt61b ddx54 ddx54 LOC103390172 LOC103390172 ENSCSEP00000025902 ENSCSEP00000025902 dimt1 dimt1 wdr75 wdr75 krr1 krr1 Abt1 Abt1 tsr2 tsr2 imp3 imp3 nol10 nol10 bud23 bud23 nol9 nol9 nop10 nop10 pes1 pes1 mettl16 mettl16 ENSCSEP00000028248 ENSCSEP00000028248 bop1 bop1 riok3 riok3 rpl7l1 rpl7l1 LOC103393247 LOC103393247 nop9 nop9 mtrex mtrex ebna1bp2 ebna1bp2 ZNHIT6 ZNHIT6 ENSCSEP00000029498 ENSCSEP00000029498 ENSCSEP00000029713 ENSCSEP00000029713 exosc8 exosc8 rexo4 rexo4 nob1 nob1 rsl1d1 rsl1d1 dhx37 dhx37 brix1 brix1 nop14 nop14 eif6 eif6 utp15 utp15 nop2 nop2 emg1 emg1 ddx27 ddx27 utp11 utp11 wdr36 wdr36 LOC103391498 LOC103391498 mrm2 mrm2 LOC103379554 LOC103379554 wdr46 wdr46 mphosph6 mphosph6 mrto4 mrto4 utp3 utp3
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
eri1Exoribonuclease 1. (340 aa)
tfb1mrRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (383 aa)
nsun5NOP2/Sun RNA methyltransferase 5; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (503 aa)
wdr18WD repeat domain 18. (409 aa)
lsm6LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (98 aa)
utp4UTP4 small subunit processome component. (685 aa)
c1dC1D nuclear receptor corepressor. (155 aa)
rrp9Ribosomal RNA processing 9, U3 small nucleolar RNA binding protein. (479 aa)
rcl1RNA terminal phosphate cyclase-like 1. (426 aa)
fcf1FCF1 rRNA-processing protein. (197 aa)
ENSCSEP00000001046Helicase, POLQ like. (923 aa)
rrnad1Ribosomal RNA adenine dimethylase domain containing 1. (538 aa)
LOC103389228PWP2 small subunit processome component. (912 aa)
LOC103383370RNA binding motif protein 34. (432 aa)
RRP36Ribosomal RNA processing 36. (326 aa)
ENSCSEP00000001637Uncharacterized protein. (130 aa)
esf1ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae). (796 aa)
mettl15Methyltransferase like 15. (395 aa)
mphosph10U3 small nucleolar ribonucleoprotein protein MPP10; Component of the 60-80S U3 small nucleolar ribonucleoprotein (U3 snoRNP). Required for the early cleavages during pre-18S ribosomal RNA processing; Belongs to the MPP10 family. (685 aa)
droshaDrosha ribonuclease III. (1350 aa)
tex10Testis expressed 10. (938 aa)
mrpl44Mitochondrial ribosomal protein L44. (332 aa)
rpp38Ribonuclease P/MRP 38 subunit. (269 aa)
rpp30Ribonuclease P/MRP 30 subunit. (290 aa)
rpusd2RNA pseudouridine synthase domain containing 2. (578 aa)
sart1Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP. (767 aa)
eri2ERI1 exoribonuclease family member 2. (727 aa)
ENSCSEP00000003172RNA helicase. (787 aa)
byslBystin-like. (472 aa)
rps2540S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (123 aa)
ENSCSEP00000003650Uncharacterized protein. (184 aa)
Heatr1BP28CT domain-containing protein. (338 aa)
bms1BMS1 ribosome biogenesis factor. (1218 aa)
pop4Ribonuclease P protein subunit p29; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends. (221 aa)
LOC103385946Proliferation-associated 2G4, a. (391 aa)
gar1H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (222 aa)
LOC103387149Methyltransf_25 domain-containing protein. (234 aa)
wdr12Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (423 aa)
zcchc4Zinc finger, CCHC domain containing 4. (492 aa)
trmt2btRNA methyltransferase 2 homolog B; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (492 aa)
gnl3Guanine nucleotide binding protein-like 3 (nucleolar). (547 aa)
gemin4Gem (nuclear organelle) associated protein 4. (1100 aa)
exosc10Exosome component 10. (896 aa)
wdr55WD repeat-containing protein 55; Nucleolar protein that acts as a modulator of rRNA synthesis. Plays a central role during organogenesis. Belongs to the WD repeat WDR55 family. (419 aa)
exosc3Exosome component 3. (244 aa)
trmt112tRNA methyltransferase subunit 11-2. (123 aa)
ENSCSEP00000008985NOP2/Sun RNA methyltransferase 3; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (333 aa)
ercc2Excision repair cross-complementation group 2. (760 aa)
Rpusd4PseudoU_synth_2 domain-containing protein. (221 aa)
nhp2Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (155 aa)
Pelp1Proline, glutamate and leucine rich protein 1. (1135 aa)
fdxacb1Ferredoxin-fold anticodon binding domain containing 1. (604 aa)
rrp7aRibosomal RNA processing 7 homolog A. (282 aa)
LOC103385095Proliferation-associated 2G4, b. (392 aa)
Rrp8Ribosomal RNA-processing protein 8; Probable methyltransferase required to silence rDNA. Belongs to the methyltransferase superfamily. RRP8 family. (380 aa)
gtpbp4Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (604 aa)
LOC103399497PseudoU_synth_2 domain-containing protein. (103 aa)
wbp11Uncharacterized protein. (622 aa)
ddx47DEAD (Asp-Glu-Ala-Asp) box polypeptide 47; Belongs to the DEAD box helicase family. (441 aa)
ENSCSEP00000011985Ribonuclease P and MRP subunit p25, b. (172 aa)
rrp12Ribosomal RNA processing 12 homolog. (1288 aa)
ENSCSEP00000012296Ribosomal_L30 domain-containing protein. (112 aa)
npm3Nucleophosmin/nucleoplasmin, 3. (168 aa)
utp18Uncharacterized protein. (518 aa)
TFB2MrRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (435 aa)
LOC103396928Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. (166 aa)
ddx56DEAD (Asp-Glu-Ala-Asp) box helicase 56. (561 aa)
lyarLy1 antibody reactive. (341 aa)
ngdnNeuroguidin, EIF4E binding protein. (319 aa)
rpf1Ribosome production factor 1 homolog. (379 aa)
UTP14CUTP14C small subunit processome component. (759 aa)
wdr3WD repeat domain 3. (940 aa)
LOC103397472Ribosomal protein L35. (123 aa)
ddx52DEAD (Asp-Glu-Ala-Asp) box polypeptide 52. (672 aa)
rpl7Ribosomal protein L7. (221 aa)
Nol11Nucleolar protein 11. (714 aa)
ENSCSEP00000015649PWP1 homolog, endonuclein. (457 aa)
mak16Protein MAK16 homolog; Belongs to the MAK16 family. (290 aa)
fblFibrillarin. (311 aa)
mrps11Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family. (194 aa)
rrp15Ribosomal RNA processing 15 homolog. (252 aa)
pdcd11Programmed cell death 11. (1762 aa)
exosc4Exosome component 4. (245 aa)
LOC103383875Uncharacterized protein. (468 aa)
LOC103397057Uncharacterized protein. (127 aa)
exosc7Exosome component 7. (291 aa)
pop5Ribonuclease P/MRP protein subunit POP5; Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. (150 aa)
utp23UTP23 small subunit processome component. (257 aa)
mettl5Methyltransferase like 5. (230 aa)
srfbp1BUD22 domain-containing protein. (397 aa)
nsun4NOP2/Sun RNA methyltransferase 4; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (400 aa)
tsr3Probable ribosome biogenesis protein; Probable pre-rRNA processing protein involved in ribosome biogenesis. (298 aa)
dkc1Dyskeratosis congenita 1, dyskerin. (471 aa)
urb1URB1 ribosome biogenesis homolog. (2218 aa)
Nol8RRM domain-containing protein. (104 aa)
tsr1TSR1 ribosome maturation factor. (828 aa)
nat10RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1038 aa)
nsa2NSA2 ribosome biogenesis homolog (S. cerevisiae). (242 aa)
Pop7Ribonuclease P protein subunit p20; Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of the MRP ribonuclease complex, which cleaves pre-rRNA sequences. (129 aa)
ENSCSEP00000020864Protein kinase, DNA-activated, catalytic subunit; Belongs to the PI3/PI4-kinase family. (3778 aa)
ftsj3pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (867 aa)
mrm3Mitochondrial rRNA methyltransferase 3a. (462 aa)
utp6UTP6 small subunit processome component. (581 aa)
dcaf13Ddb1 and cul4 associated factor 13. (445 aa)
ddx21DEAD (Asp-Glu-Ala-Asp) box helicase 21. (765 aa)
mrpl1Mitochondrial ribosomal protein L1. (322 aa)
riok2RIO kinase 2 (yeast). (517 aa)
exosc6Exosome component 6. (270 aa)
Mrm1Mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae). (370 aa)
exosc9Exosome component 9. (400 aa)
kri1KRI1 homolog. (752 aa)
rrs1Ribosome biogenesis regulatory protein; Involved in ribosomal large subunit assembly. Belongs to the RRS1 family. (313 aa)
utp20UTP20 small subunit processome component. (2626 aa)
nop53Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (454 aa)
rpp40Uncharacterized protein. (348 aa)
ENSCSEP00000023551RIO kinase 1 (yeast). (483 aa)
ddx18RNA helicase. (670 aa)
pih1d2PIH1 domain containing 2. (317 aa)
nifkNucleolar protein interacting with the FHA domain of MKI67. (285 aa)
wdr74WD repeat domain 74. (398 aa)
pih1d1PIH1 domain containing 1. (287 aa)
tbl3Transducin (beta)-like 3. (937 aa)
LOC103395995Uncharacterized protein. (359 aa)
rpf2Ribosome production factor 2 homolog. (303 aa)
frg1FSHD region gene 1. (244 aa)
ddx51DEAD (Asp-Glu-Ala-Asp) box polypeptide 51; Belongs to the DEAD box helicase family. (672 aa)
imp4IMP U3 small nucleolar ribonucleoprotein 4. (291 aa)
utp25UTP25 small subunit processor component. (757 aa)
ddx49DEAD (Asp-Glu-Ala-Asp) box polypeptide 49; Belongs to the DEAD box helicase family. (483 aa)
znhit3Zinc finger, HIT-type containing 3. (150 aa)
ybeyYbeY metalloendoribonuclease. (168 aa)
wdr43WD repeat domain 43. (650 aa)
trmt61btRNA methyltransferase 61B. (502 aa)
ddx54ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily. (861 aa)
LOC103390172Exosome component 2. (291 aa)
ENSCSEP00000025902Exosome component 2. (135 aa)
dimt1rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (306 aa)
wdr75WD repeat domain 75. (842 aa)
krr1KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (357 aa)
Abt1Activator of basal transcription 1. (380 aa)
tsr2TSR2 ribosome maturation factor. (173 aa)
imp3IMP U3 small nucleolar ribonucleoprotein 3. (183 aa)
nol10Nucleolar protein 10. (692 aa)
bud23BUD23 rRNA methyltransferase and ribosome maturation factor. (287 aa)
nol9Nucleolar protein 9. (701 aa)
nop10NOP10 ribonucleoprotein homolog (yeast). (64 aa)
pes1Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (588 aa)
mettl16U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase; RNA N6-methyltransferase that methylates adenosine residues of a subset of RNAs and plays a key role in S-adenosyl-L-methionine homeostasis by regulating expression of MAT2A transcripts. Able to N6- methylate a subset of mRNAs and U6 small nuclear RNAs (U6 snRNAs). In contrast to the METTL3-METTL14 heterodimer, only able to methylate a limited number of RNAs: requires both a 5'UACAGAGAA-3' nonamer sequence and a specific RNA structure. In presence of S-adenosyl-L-methionine, binds the 3'-UTR region of MAT2A mRNA and specifical [...] (548 aa)
ENSCSEP00000028248Nuclear VCP like. (752 aa)
bop1Ribosome biogenesis protein BOP1; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (695 aa)
riok3Serine/threonine-protein kinase RIO3; Belongs to the protein kinase superfamily. RIO-type Ser/Thr kinase family. (584 aa)
rpl7l1Ribosomal protein L7-like 1. (262 aa)
LOC103393247RNA pseudouridine synthase domain containing 1. (311 aa)
nop9Uncharacterized protein. (623 aa)
mtrexMtr4 exosome RNA helicase. (1053 aa)
ebna1bp2EBNA1 binding protein 2. (324 aa)
ZNHIT6Zinc finger HIT-type containing 6. (402 aa)
ENSCSEP00000029498Helicase ATP-binding domain-containing protein. (909 aa)
ENSCSEP00000029713Uncharacterized protein. (122 aa)
exosc8Exosome component 8. (277 aa)
rexo4REX4 homolog, 3'-5' exonuclease. (422 aa)
nob1RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family. (408 aa)
rsl1d1Ribosomal L1 domain containing 1. (369 aa)
dhx37DEAH (Asp-Glu-Ala-His) box polypeptide 37. (1151 aa)
brix1Brix domain containing 2. (340 aa)
nop14NOP14 nucleolar protein homolog (yeast). (886 aa)
eif6Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis. (259 aa)
utp15UTP15 small subunit processome component. (525 aa)
nop2NOP2 nucleolar protein homolog (yeast); Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (703 aa)
emg1EMG1 N1-specific pseudouridine methyltransferase. (240 aa)
ddx27DEAD (Asp-Glu-Ala-Asp) box polypeptide 27; Belongs to the DEAD box helicase family. (770 aa)
utp11U3 small nucleolar RNA-associated protein 11; Involved in nucleolar processing of pre-18S ribosomal RNA. (254 aa)
wdr36WD repeat domain 36. (839 aa)
LOC103391498Uncharacterized protein. (705 aa)
mrm2Mitochondrial rRNA methyltransferase 2. (322 aa)
LOC103379554Zona pellucida glycoprotein d. (405 aa)
wdr46WD repeat domain 46. (597 aa)
mphosph6M-phase phosphoprotein 6. (161 aa)
mrto4Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (239 aa)
utp3UTP3 small subunit processome component. (356 aa)
Your Current Organism:
Cynoglossus semilaevis
NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole
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