54 items (Cynoglossus semilaevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	stx11	Syntaxin 11a; Belongs to the syntaxin family. (295 aa)
	syt9	Synaptotagmin IXb. (527 aa)
	ENSCSEP00000033449	Synaptotagmin Ib. (352 aa)
	UNC13B	Unc-13 homolog B. (1514 aa)
	ENSCSEP00000031637	Uncharacterized protein. (1803 aa)
	snap29	Synaptosome associated protein 29. (262 aa)
	cplx4	Complexin 4a. (159 aa)
	LOC103382006	Uncharacterized protein. (411 aa)
	ENSCSEP00000029424	C2 domain-containing protein. (298 aa)
	ENSCSEP00000028762	Synaptotagmin IIa. (430 aa)
	ENSCSEP00000027623	Proline-rich transmembrane protein 2. (172 aa)
	stx1a	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (296 aa)
	LOC103386620	Uncharacterized protein. (1223 aa)
	SYT2	Synaptotagmin 2. (429 aa)
	LOC103398790	Syntaxin 2b; Belongs to the syntaxin family. (298 aa)
	ENSCSEP00000024650	t-SNARE coiled-coil homology domain-containing protein. (102 aa)
	LOC103384304	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (285 aa)
	snapin	SNAP associated protein. (129 aa)
	LOC103379169	Synaptotagmin IXa. (563 aa)
	LOC103381893	Syntaxin 4; Belongs to the syntaxin family. (296 aa)
	ENSCSEP00000022706	t-SNARE coiled-coil homology domain-containing protein. (71 aa)
	LOC103395938	Uncharacterized protein. (1528 aa)
	rims3	Regulating synaptic membrane exocytosis 3. (314 aa)
	RIMS2	Regulating synaptic membrane exocytosis 2. (1262 aa)
	UNC13C	Unc-13 homolog C. (2147 aa)
	ENSCSEP00000020228	Uncharacterized protein. (335 aa)
	LOC103391089	Complexin 2. (133 aa)
	CPLX1	Complexin 1. (152 aa)
	snap47	Synaptosome associated protein 47. (427 aa)
	cplx3	Complexin 3b. (156 aa)
	stx1b	Syntaxin 1B; Belongs to the syntaxin family. (335 aa)
	snap25	Synaptosomal-associated protein; Belongs to the SNAP-25 family. (204 aa)
	ENSCSEP00000016734	Synaptosomal-associated protein; Belongs to the SNAP-25 family. (188 aa)
	ENSCSEP00000016675	Uncharacterized protein. (143 aa)
	LOC103382799	ELKS/RAB6-interacting/CAST family member 1. (974 aa)
	LOC103399745	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family. (92 aa)
	LOC103380297	Synaptotagmin VIIa. (571 aa)
	LOC103390944	Syntaxin 3A; Belongs to the syntaxin family. (289 aa)
	ENSCSEP00000010787	t-SNARE coiled-coil homology domain-containing protein. (279 aa)
	ENSCSEP00000010318	Otoferlin b. (1663 aa)
	erc1	ELKS/RAB6-interacting/CAST family member 1a. (1158 aa)
	snap23	Synaptosomal-associated protein; Belongs to the SNAP-25 family. (215 aa)
	syt1	Synaptotagmin Ia. (452 aa)
	LOC103381097	t-SNARE coiled-coil homology domain-containing protein. (298 aa)
	UNC13A	Unc-13 homolog A. (1566 aa)
	ENSCSEP00000004128	Uncharacterized protein. (529 aa)
	LOC103386995	Regulating synaptic membrane exocytosis 1a. (1541 aa)
	LOC103379952	Synaptotagmin XII. (418 aa)
	ENSCSEP00000003001	Uncharacterized protein. (73 aa)
	ENSCSEP00000002996	Synaptotagmin VIIb. (497 aa)
	LOC103385806	ELKS/RAB6-interacting/CAST family member 2. (928 aa)
	CADPS2	Calcium dependent secretion activator 2. (1290 aa)
	cadps	Ca2+-dependent activator protein for secretion b. (1376 aa)
	LOC103380976	Otoferlin a. (1924 aa)

Your Current Organism:

Cynoglossus semilaevis

NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CPLX1	ENSCSEP00000010787	ENSCSEP00000019256	ENSCSEP00000010787	Complexin 1.	t-SNARE coiled-coil homology domain-containing protein.	0.542
CPLX1	ENSCSEP00000016734	ENSCSEP00000019256	ENSCSEP00000016734	Complexin 1.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.832
CPLX1	ENSCSEP00000022706	ENSCSEP00000019256	ENSCSEP00000022706	Complexin 1.	t-SNARE coiled-coil homology domain-containing protein.	0.585
CPLX1	ENSCSEP00000024650	ENSCSEP00000019256	ENSCSEP00000024650	Complexin 1.	t-SNARE coiled-coil homology domain-containing protein.	0.585
CPLX1	ENSCSEP00000028762	ENSCSEP00000019256	ENSCSEP00000028762	Complexin 1.	Synaptotagmin IIa.	0.568
CPLX1	ENSCSEP00000029424	ENSCSEP00000019256	ENSCSEP00000029424	Complexin 1.	C2 domain-containing protein.	0.404
CPLX1	ENSCSEP00000033449	ENSCSEP00000019256	ENSCSEP00000033449	Complexin 1.	Synaptotagmin Ib.	0.568
CPLX1	LOC103381097	ENSCSEP00000019256	ENSCSEP00000004556	Complexin 1.	t-SNARE coiled-coil homology domain-containing protein.	0.542
CPLX1	LOC103381893	ENSCSEP00000019256	ENSCSEP00000022721	Complexin 1.	Syntaxin 4; Belongs to the syntaxin family.	0.585
CPLX1	LOC103384304	ENSCSEP00000019256	ENSCSEP00000024602	Complexin 1.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.585
CPLX1	LOC103386995	ENSCSEP00000019256	ENSCSEP00000003557	Complexin 1.	Regulating synaptic membrane exocytosis 1a.	0.404
CPLX1	LOC103390944	ENSCSEP00000019256	ENSCSEP00000010963	Complexin 1.	Syntaxin 3A; Belongs to the syntaxin family.	0.585
CPLX1	LOC103398790	ENSCSEP00000019256	ENSCSEP00000025211	Complexin 1.	Syntaxin 2b; Belongs to the syntaxin family.	0.585
CPLX1	LOC103399745	ENSCSEP00000019256	ENSCSEP00000012336	Complexin 1.	t-SNARE coiled-coil homology domain-containing protein; Belongs to the syntaxin family.	0.585
CPLX1	RIMS2	ENSCSEP00000019256	ENSCSEP00000021360	Complexin 1.	Regulating synaptic membrane exocytosis 2.	0.413
CPLX1	SYT2	ENSCSEP00000019256	ENSCSEP00000025265	Complexin 1.	Synaptotagmin 2.	0.568
CPLX1	rims3	ENSCSEP00000019256	ENSCSEP00000022160	Complexin 1.	Regulating synaptic membrane exocytosis 3.	0.404
CPLX1	snap23	ENSCSEP00000019256	ENSCSEP00000007790	Complexin 1.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.539
CPLX1	snap25	ENSCSEP00000019256	ENSCSEP00000016929	Complexin 1.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.832
CPLX1	snap29	ENSCSEP00000019256	ENSCSEP00000031052	Complexin 1.	Synaptosome associated protein 29.	0.539