STRINGSTRING
srp54 srp54 LOC103386310 LOC103386310 cebpa cebpa lef1 lef1 ENSCSEP00000013689 ENSCSEP00000013689 LOC103391788 LOC103391788 LOC103380263 LOC103380263 SP3 SP3 LOC103377358 LOC103377358 LOC103377364 LOC103377364 Gata1 Gata1 fasn fasn dhrs7b dhrs7b usb1 usb1 ncoa2 ncoa2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
srp54Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily. (526 aa)
LOC103386310GATA binding protein 1a. (429 aa)
cebpaCCAAT/enhancer-binding protein. (285 aa)
lef1Lymphoid enhancer-binding factor 1. (361 aa)
ENSCSEP00000013689CCAAT/enhancer binding protein (C/EBP) 1. (190 aa)
LOC103391788Jagunal homolog 1a. (195 aa)
LOC103380263Sp3b transcription factor. (646 aa)
SP3Sp3a transcription factor. (747 aa)
LOC103377358Si:dkey-61p9.11. (2101 aa)
LOC103377364Carrier domain-containing protein. (2084 aa)
Gata1Uncharacterized protein. (289 aa)
fasnCoiled-coil domain containing 57. (2491 aa)
dhrs7bDehydrogenase/reductase (SDR family) member 7B; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (311 aa)
usb1U6 snRNA phosphodiesterase; Phosphodiesterase responsible for the U6 snRNA 3' end processing. Acts as an exoribonuclease (RNase) responsible for trimming the poly(U) tract of the last nucleotides in the pre-U6 snRNA molecule, leading to the formation of mature U6 snRNA; Belongs to the 2H phosphoesterase superfamily. USB1 family. (276 aa)
ncoa2Nuclear receptor coactivator 2. (1552 aa)
Your Current Organism:
Cynoglossus semilaevis
NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole
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