STRINGSTRING
uhrf1 uhrf1 pgf pgf ENSCSEP00000005425 ENSCSEP00000005425 UPF2 UPF2 cdkal1 cdkal1 nr0b2 nr0b2 med1 med1 fitm2 fitm2 LOC103386310 LOC103386310 rara-2 rara-2 hnf1b hnf1b cldn1 cldn1 Gata1 Gata1 gfer gfer LOC103385607 LOC103385607
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
uhrf1Ubiquitin-like with PHD and ring finger domains 1. (803 aa)
pgfPDGF_2 domain-containing protein; Belongs to the PDGF/VEGF growth factor family. (164 aa)
ENSCSEP00000005425MIF4G domain-containing protein. (343 aa)
UPF2UPF2 regulator of nonsense mediated mRNA decay. (1227 aa)
cdkal1CDK5 regulatory subunit associated protein 1-like 1. (564 aa)
nr0b2Nuclear receptor subfamily 0, group B, member 2a. (257 aa)
med1Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. (1707 aa)
fitm2Fat storage inducing transmembrane protein 2. (258 aa)
LOC103386310GATA binding protein 1a. (429 aa)
rara-2Marker of proliferation Ki-67. (1946 aa)
hnf1bHNF1 homeobox Ba. (623 aa)
cldn1Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family. (211 aa)
Gata1Uncharacterized protein. (289 aa)
gferSulfhydryl oxidase. (194 aa)
LOC103385607CCAAT enhancer binding protein beta. (371 aa)
Your Current Organism:
Cynoglossus semilaevis
NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole
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