15 items (Cynoglossus semilaevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	prpf19	Pre-mRNA processing factor 19. (504 aa)
	celf4	CUGBP, Elav-like family member 4. (526 aa)
	LOC103388282	Cugbp, Elav-like family member 3b. (458 aa)
	LOC103378456	Transformer 2 beta homolog. (314 aa)
	rbmx	RNA binding motif protein X-linked. (392 aa)
	nup98	Nucleoporin 98. (1838 aa)
	snw1	SNW domain containing 1. (519 aa)
	dazap1	DAZ associated protein 1. (416 aa)
	LOC103396116	Uncharacterized protein. (529 aa)
	sf3b4	Splicing factor 3b, subunit 4. (479 aa)
	ncl	Nucleolin. (698 aa)
	LOC103395949	Cold inducible RNA binding protein b. (224 aa)
	tra2a	Transformer 2 alpha homolog. (301 aa)
	tra2b	Transformer 2 beta homolog. (268 aa)
	LOC103394576	Cugbp, Elav-like family member 3a. (453 aa)

Your Current Organism:

Cynoglossus semilaevis

NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103378456	LOC103395949	ENSCSEP00000004438	ENSCSEP00000022511	Transformer 2 beta homolog.	Cold inducible RNA binding protein b.	0.536
LOC103378456	dazap1	ENSCSEP00000004438	ENSCSEP00000028392	Transformer 2 beta homolog.	DAZ associated protein 1.	0.443
LOC103378456	ncl	ENSCSEP00000004438	ENSCSEP00000023695	Transformer 2 beta homolog.	Nucleolin.	0.441
LOC103378456	prpf19	ENSCSEP00000004438	ENSCSEP00000016173	Transformer 2 beta homolog.	Pre-mRNA processing factor 19.	0.461
LOC103378456	rbmx	ENSCSEP00000004438	ENSCSEP00000008236	Transformer 2 beta homolog.	RNA binding motif protein X-linked.	0.617
LOC103378456	sf3b4	ENSCSEP00000004438	ENSCSEP00000023933	Transformer 2 beta homolog.	Splicing factor 3b, subunit 4.	0.608
LOC103378456	snw1	ENSCSEP00000004438	ENSCSEP00000029302	Transformer 2 beta homolog.	SNW domain containing 1.	0.409
LOC103395949	LOC103378456	ENSCSEP00000022511	ENSCSEP00000004438	Cold inducible RNA binding protein b.	Transformer 2 beta homolog.	0.536
LOC103395949	ncl	ENSCSEP00000022511	ENSCSEP00000023695	Cold inducible RNA binding protein b.	Nucleolin.	0.451
LOC103395949	prpf19	ENSCSEP00000022511	ENSCSEP00000016173	Cold inducible RNA binding protein b.	Pre-mRNA processing factor 19.	0.473
LOC103395949	rbmx	ENSCSEP00000022511	ENSCSEP00000008236	Cold inducible RNA binding protein b.	RNA binding motif protein X-linked.	0.490
LOC103395949	sf3b4	ENSCSEP00000022511	ENSCSEP00000023933	Cold inducible RNA binding protein b.	Splicing factor 3b, subunit 4.	0.512
LOC103395949	snw1	ENSCSEP00000022511	ENSCSEP00000029302	Cold inducible RNA binding protein b.	SNW domain containing 1.	0.414
LOC103395949	tra2a	ENSCSEP00000022511	ENSCSEP00000019042	Cold inducible RNA binding protein b.	Transformer 2 alpha homolog.	0.532
LOC103395949	tra2b	ENSCSEP00000022511	ENSCSEP00000018229	Cold inducible RNA binding protein b.	Transformer 2 beta homolog.	0.529
LOC103396116	rbmx	ENSCSEP00000027204	ENSCSEP00000008236	Uncharacterized protein.	RNA binding motif protein X-linked.	0.409
dazap1	LOC103378456	ENSCSEP00000028392	ENSCSEP00000004438	DAZ associated protein 1.	Transformer 2 beta homolog.	0.443
dazap1	tra2a	ENSCSEP00000028392	ENSCSEP00000019042	DAZ associated protein 1.	Transformer 2 alpha homolog.	0.448
dazap1	tra2b	ENSCSEP00000028392	ENSCSEP00000018229	DAZ associated protein 1.	Transformer 2 beta homolog.	0.437
ncl	LOC103378456	ENSCSEP00000023695	ENSCSEP00000004438	Nucleolin.	Transformer 2 beta homolog.	0.441