STRINGSTRING
shmt1 shmt1 mrps11 mrps11 ENSCSEP00000016664 ENSCSEP00000016664 shmt2 shmt2 larp6 larp6 utp23 utp23 dhx36 dhx36 fmr1 fmr1 rsl1d1 rsl1d1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
shmt1Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (466 aa)
mrps11Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family. (194 aa)
ENSCSEP00000016664Chaperonin containing TCP1, subunit 5 (epsilon). (486 aa)
shmt2Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family. (501 aa)
larp6La ribonucleoprotein domain family, member 6a. (668 aa)
utp23UTP23 small subunit processome component. (257 aa)
dhx36DEAH (Asp-Glu-Ala-His) box polypeptide 36. (1069 aa)
fmr1Fragile X mental retardation 1. (581 aa)
rsl1d1Ribosomal L1 domain containing 1. (369 aa)
Your Current Organism:
Cynoglossus semilaevis
NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole
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