31 items (Cynoglossus semilaevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103393988	Galanin receptor 1a; Belongs to the G-protein coupled receptor 1 family. (357 aa)
	LOC103386467	Uncharacterized protein. (109 aa)
	LOC103386468	Uncharacterized protein. (108 aa)
	ENSCSEP00000024142	Adhesion G protein-coupled receptor V1; Belongs to the G-protein coupled receptor 2 family. (5833 aa)
	drd3	Dopamine receptor D3; Belongs to the G-protein coupled receptor 1 family. (457 aa)
	ncs1	Neuronal calcium sensor 1a. (191 aa)
	guca1b	Guanylate cyclase activator 1B. (197 aa)
	phpt1	Phosphohistidine phosphatase 1. (128 aa)
	rd3	Retinal degeneration 3, GUCY2D regulator. (218 aa)
	LOC103397941	Si:dkey-51e6.1. (139 aa)
	ENSCSEP00000000815	Paralemmin 1a. (317 aa)
	LOC103377507	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family. (445 aa)
	LOC103385872	Si:ch211-103a14.5. (187 aa)
	Nf1	Neurofibromin 1b. (2702 aa)
	ENSCSEP00000004808	PDZ domain-containing protein. (351 aa)
	LOC103378821	Galanin receptor 1b; Belongs to the G-protein coupled receptor 1 family. (369 aa)
	rxfp1	Relaxin family peptide receptor 1. (787 aa)
	LOC103384839	Uncharacterized protein. (187 aa)
	LOC103379801	Paralemmin 1b. (229 aa)
	LOC103395643	Guanylate cyclase activator 1d. (185 aa)
	LOC103382714	Guanylate cyclase activator 1A. (206 aa)
	fxn	Frataxin. (205 aa)
	LOC103388657	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (346 aa)
	LOC103397486	Natriuretic peptide receptor 3. (504 aa)
	VIPR2	Vasoactive intestinal peptide receptor 2; Belongs to the G-protein coupled receptor 2 family. (359 aa)
	rxfp2	Leucine-rich repeat-containing G protein coupled receptor 8. (734 aa)
	LOC103398145	Adrenoceptor beta 3a; Belongs to the G-protein coupled receptor 1 family. (445 aa)
	LOC103395198	PDZ domain containing 3b. (497 aa)
	hrh4	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (373 aa)
	LOC103397062	ANF_receptor domain-containing protein. (504 aa)
	ENSCSEP00000016629	5-methyltetrahydrofolate-homocysteine methyltransferase reductase. (670 aa)

Your Current Organism:

Cynoglossus semilaevis

NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103382714	LOC103395643	ENSCSEP00000010980	ENSCSEP00000009864	Guanylate cyclase activator 1A.	Guanylate cyclase activator 1d.	0.507
LOC103382714	guca1b	ENSCSEP00000010980	ENSCSEP00000028819	Guanylate cyclase activator 1A.	Guanylate cyclase activator 1B.	0.695
LOC103384839	LOC103397062	ENSCSEP00000007274	ENSCSEP00000017361	Uncharacterized protein.	ANF_receptor domain-containing protein.	0.553
LOC103384839	LOC103397486	ENSCSEP00000007274	ENSCSEP00000014282	Uncharacterized protein.	Natriuretic peptide receptor 3.	0.553
LOC103385872	LOC103395643	ENSCSEP00000003719	ENSCSEP00000009864	Si:ch211-103a14.5.	Guanylate cyclase activator 1d.	0.504
LOC103385872	guca1b	ENSCSEP00000003719	ENSCSEP00000028819	Si:ch211-103a14.5.	Guanylate cyclase activator 1B.	0.695
LOC103386468	LOC103397062	ENSCSEP00000020542	ENSCSEP00000017361	Uncharacterized protein.	ANF_receptor domain-containing protein.	0.553
LOC103386468	LOC103397486	ENSCSEP00000020542	ENSCSEP00000014282	Uncharacterized protein.	Natriuretic peptide receptor 3.	0.553
LOC103395643	LOC103382714	ENSCSEP00000009864	ENSCSEP00000010980	Guanylate cyclase activator 1d.	Guanylate cyclase activator 1A.	0.507
LOC103395643	LOC103385872	ENSCSEP00000009864	ENSCSEP00000003719	Guanylate cyclase activator 1d.	Si:ch211-103a14.5.	0.504
LOC103397062	LOC103384839	ENSCSEP00000017361	ENSCSEP00000007274	ANF_receptor domain-containing protein.	Uncharacterized protein.	0.553
LOC103397062	LOC103386468	ENSCSEP00000017361	ENSCSEP00000020542	ANF_receptor domain-containing protein.	Uncharacterized protein.	0.553
LOC103397486	LOC103384839	ENSCSEP00000014282	ENSCSEP00000007274	Natriuretic peptide receptor 3.	Uncharacterized protein.	0.553
LOC103397486	LOC103386468	ENSCSEP00000014282	ENSCSEP00000020542	Natriuretic peptide receptor 3.	Uncharacterized protein.	0.553
drd3	ncs1	ENSCSEP00000026695	ENSCSEP00000028743	Dopamine receptor D3; Belongs to the G-protein coupled receptor 1 family.	Neuronal calcium sensor 1a.	0.741
guca1b	LOC103382714	ENSCSEP00000028819	ENSCSEP00000010980	Guanylate cyclase activator 1B.	Guanylate cyclase activator 1A.	0.695
guca1b	LOC103385872	ENSCSEP00000028819	ENSCSEP00000003719	Guanylate cyclase activator 1B.	Si:ch211-103a14.5.	0.695
ncs1	drd3	ENSCSEP00000028743	ENSCSEP00000026695	Neuronal calcium sensor 1a.	Dopamine receptor D3; Belongs to the G-protein coupled receptor 1 family.	0.741