(28 nodes) Long-term synaptic potentiation network (Cynoglossus semilaevis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Grin2c	Glutamate receptor, ionotropic, N-methyl D-aspartate 2Ca. (1248 aa)
	Tshz3	Teashirt zinc finger homeobox 3b. (1224 aa)
	LOC103379952	Synaptotagmin XII. (418 aa)
	ENSCSEP00000003501	Uncharacterized protein. (1413 aa)
	nog	Noggin; Belongs to the noggin family. (224 aa)
	serpine2	Serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2; Belongs to the serpin family. (396 aa)
	LOC103399091	Ig-like domain-containing protein. (230 aa)
	LOC103383797	Glutamate receptor, ionotropic, N-methyl D-aspartate 2B, genome duplicate b. (1758 aa)
	ENSCSEP00000010467	Solute carrier family 24 member 1; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (645 aa)
	Slc24a2	Uncharacterized protein; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (633 aa)
	ENSCSEP00000011282	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (1355 aa)
	nptn	Neuroplastin b. (393 aa)
	lrrtm1	Leucine rich repeat transmembrane neuronal 1. (524 aa)
	prrt1	Proline-rich transmembrane protein 1. (242 aa)
	ENSCSEP00000017686	Si:ch73-343g19.4. (105 aa)
	LOC103384123	Uncharacterized protein; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (629 aa)
	LOC103380461	Si:ch73-330k17.3. (159 aa)
	LOC103380455	Uncharacterized protein. (387 aa)
	LOC103394152	Uncharacterized protein. (1129 aa)
	RELN	Reelin. (3456 aa)
	LOC103381827	Glutamate receptor, ionotropic, N-methyl D-aspartate 2Cb. (1388 aa)
	lrrtm2	Leucine rich repeat transmembrane neuronal 2. (550 aa)
	LOC103393819	Glutamate receptor, ionotropic, N-methyl D-aspartate 2D, a; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family. (1844 aa)
	LOC103384377	MBD domain-containing protein. (1215 aa)
	ENSCSEP00000029361	Glutamate receptor, ionotropic, N-methyl D-aspartate 2D, b. (1241 aa)
	grin2a	Glutamate receptor, ionotropic, N-methyl D-aspartate 2A, a. (1504 aa)
	nfatc4	Nuclear factor of activated T cells 4. (791 aa)
	SLC24A1	Solute carrier family 24 member 1; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family. (775 aa)

Your Current Organism:

Cynoglossus semilaevis

NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCSEP00000003501	ENSCSEP00000011282	ENSCSEP00000003501	ENSCSEP00000011282	Uncharacterized protein.	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.580
ENSCSEP00000003501	LOC103383797	ENSCSEP00000003501	ENSCSEP00000010420	Uncharacterized protein.	Glutamate receptor, ionotropic, N-methyl D-aspartate 2B, genome duplicate b.	0.580
ENSCSEP00000011282	ENSCSEP00000003501	ENSCSEP00000011282	ENSCSEP00000003501	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	Uncharacterized protein.	0.580
ENSCSEP00000011282	LOC103384377	ENSCSEP00000011282	ENSCSEP00000027109	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	MBD domain-containing protein.	0.407
ENSCSEP00000011282	grin2a	ENSCSEP00000011282	ENSCSEP00000029709	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	Glutamate receptor, ionotropic, N-methyl D-aspartate 2A, a.	0.580
LOC103383797	ENSCSEP00000003501	ENSCSEP00000010420	ENSCSEP00000003501	Glutamate receptor, ionotropic, N-methyl D-aspartate 2B, genome duplicate b.	Uncharacterized protein.	0.580
LOC103383797	LOC103384377	ENSCSEP00000010420	ENSCSEP00000027109	Glutamate receptor, ionotropic, N-methyl D-aspartate 2B, genome duplicate b.	MBD domain-containing protein.	0.407
LOC103383797	grin2a	ENSCSEP00000010420	ENSCSEP00000029709	Glutamate receptor, ionotropic, N-methyl D-aspartate 2B, genome duplicate b.	Glutamate receptor, ionotropic, N-methyl D-aspartate 2A, a.	0.580
LOC103384377	ENSCSEP00000011282	ENSCSEP00000027109	ENSCSEP00000011282	MBD domain-containing protein.	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.407
LOC103384377	LOC103383797	ENSCSEP00000027109	ENSCSEP00000010420	MBD domain-containing protein.	Glutamate receptor, ionotropic, N-methyl D-aspartate 2B, genome duplicate b.	0.407
grin2a	ENSCSEP00000011282	ENSCSEP00000029709	ENSCSEP00000011282	Glutamate receptor, ionotropic, N-methyl D-aspartate 2A, a.	Uncharacterized protein; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.	0.580
grin2a	LOC103383797	ENSCSEP00000029709	ENSCSEP00000010420	Glutamate receptor, ionotropic, N-methyl D-aspartate 2A, a.	Glutamate receptor, ionotropic, N-methyl D-aspartate 2B, genome duplicate b.	0.580