(15 nodes) Renal absorption network (Cynoglossus semilaevis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	amn	Amnion associated transmembrane protein. (474 aa)
	klhl2	Kelch-like family member 2. (528 aa)
	aqp1	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (310 aa)
	LOC103396390	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (262 aa)
	LOC103391315	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family. (412 aa)
	ENSCSEP00000029338	G_PROTEIN_RECEP_F1_2 domain-containing protein. (192 aa)
	ednra	Endothelin receptor type Aa; Belongs to the G-protein coupled receptor 1 family. (455 aa)
	LOC103390502	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (282 aa)
	LOC103378806	Potassium voltage-gated channel, KQT-like subfamily, member 1.1; Belongs to the potassium channel family. (667 aa)
	klhl3	Kelch-like family member 3. (628 aa)
	LOC103389133	Endothelin receptor type Ab; Belongs to the G-protein coupled receptor 1 family. (417 aa)
	ENSCSEP00000010323	G_PROTEIN_RECEP_F1_2 domain-containing protein. (158 aa)
	ENSCSEP00000014361	Uncharacterized protein; Belongs to the potassium channel family. (717 aa)
	ENSCSEP00000015353	Endothelin receptor type Bb; Belongs to the G-protein coupled receptor 1 family. (415 aa)
	edn1	Endothelin 1. (208 aa)

Your Current Organism:

Cynoglossus semilaevis

NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCSEP00000010323	LOC103389133	ENSCSEP00000010323	ENSCSEP00000008034	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Endothelin receptor type Ab; Belongs to the G-protein coupled receptor 1 family.	0.526
ENSCSEP00000010323	edn1	ENSCSEP00000010323	ENSCSEP00000015996	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Endothelin 1.	0.929
ENSCSEP00000010323	ednra	ENSCSEP00000010323	ENSCSEP00000000608	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Endothelin receptor type Aa; Belongs to the G-protein coupled receptor 1 family.	0.526
ENSCSEP00000014361	LOC103378806	ENSCSEP00000014361	ENSCSEP00000004657	Uncharacterized protein; Belongs to the potassium channel family.	Potassium voltage-gated channel, KQT-like subfamily, member 1.1; Belongs to the potassium channel family.	0.903
ENSCSEP00000015353	LOC103389133	ENSCSEP00000015353	ENSCSEP00000008034	Endothelin receptor type Bb; Belongs to the G-protein coupled receptor 1 family.	Endothelin receptor type Ab; Belongs to the G-protein coupled receptor 1 family.	0.536
ENSCSEP00000015353	edn1	ENSCSEP00000015353	ENSCSEP00000015996	Endothelin receptor type Bb; Belongs to the G-protein coupled receptor 1 family.	Endothelin 1.	0.929
ENSCSEP00000015353	ednra	ENSCSEP00000015353	ENSCSEP00000000608	Endothelin receptor type Bb; Belongs to the G-protein coupled receptor 1 family.	Endothelin receptor type Aa; Belongs to the G-protein coupled receptor 1 family.	0.539
ENSCSEP00000029338	LOC103389133	ENSCSEP00000029338	ENSCSEP00000008034	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Endothelin receptor type Ab; Belongs to the G-protein coupled receptor 1 family.	0.526
ENSCSEP00000029338	edn1	ENSCSEP00000029338	ENSCSEP00000015996	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Endothelin 1.	0.929
ENSCSEP00000029338	ednra	ENSCSEP00000029338	ENSCSEP00000000608	G_PROTEIN_RECEP_F1_2 domain-containing protein.	Endothelin receptor type Aa; Belongs to the G-protein coupled receptor 1 family.	0.531
LOC103378806	ENSCSEP00000014361	ENSCSEP00000004657	ENSCSEP00000014361	Potassium voltage-gated channel, KQT-like subfamily, member 1.1; Belongs to the potassium channel family.	Uncharacterized protein; Belongs to the potassium channel family.	0.903
LOC103389133	ENSCSEP00000010323	ENSCSEP00000008034	ENSCSEP00000010323	Endothelin receptor type Ab; Belongs to the G-protein coupled receptor 1 family.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.526
LOC103389133	ENSCSEP00000015353	ENSCSEP00000008034	ENSCSEP00000015353	Endothelin receptor type Ab; Belongs to the G-protein coupled receptor 1 family.	Endothelin receptor type Bb; Belongs to the G-protein coupled receptor 1 family.	0.536
LOC103389133	ENSCSEP00000029338	ENSCSEP00000008034	ENSCSEP00000029338	Endothelin receptor type Ab; Belongs to the G-protein coupled receptor 1 family.	G_PROTEIN_RECEP_F1_2 domain-containing protein.	0.526
LOC103389133	LOC103391315	ENSCSEP00000008034	ENSCSEP00000028528	Endothelin receptor type Ab; Belongs to the G-protein coupled receptor 1 family.	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	0.951
LOC103389133	edn1	ENSCSEP00000008034	ENSCSEP00000015996	Endothelin receptor type Ab; Belongs to the G-protein coupled receptor 1 family.	Endothelin 1.	0.996
LOC103389133	ednra	ENSCSEP00000008034	ENSCSEP00000000608	Endothelin receptor type Ab; Belongs to the G-protein coupled receptor 1 family.	Endothelin receptor type Aa; Belongs to the G-protein coupled receptor 1 family.	0.902
LOC103391315	LOC103389133	ENSCSEP00000028528	ENSCSEP00000008034	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	Endothelin receptor type Ab; Belongs to the G-protein coupled receptor 1 family.	0.951
LOC103391315	edn1	ENSCSEP00000028528	ENSCSEP00000015996	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	Endothelin 1.	0.992
LOC103391315	ednra	ENSCSEP00000028528	ENSCSEP00000000608	G_PROTEIN_RECEP_F1_2 domain-containing protein; Belongs to the G-protein coupled receptor 1 family.	Endothelin receptor type Aa; Belongs to the G-protein coupled receptor 1 family.	0.951