9 items (Cynoglossus semilaevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ssb	Small RNA binding exonuclease protection factor La. (399 aa)
	exosc4	Exosome component 4. (245 aa)
	Atm	Non-specific serine/threonine protein kinase. (3052 aa)
	exosc10	Exosome component 10. (896 aa)
	mtpap	Mitochondrial poly(A) polymerase. (563 aa)
	LOC103396910	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (184 aa)
	lsm1	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (145 aa)
	xrn1	5'-3' exoribonuclease 1. (1618 aa)
	dcp2	Decapping mRNA 2. (390 aa)

Your Current Organism:

Cynoglossus semilaevis

NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103396910	dcp2	ENSCSEP00000012865	ENSCSEP00000026369	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Decapping mRNA 2.	0.910
LOC103396910	lsm1	ENSCSEP00000012865	ENSCSEP00000016448	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.900
LOC103396910	xrn1	ENSCSEP00000012865	ENSCSEP00000033156	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	5'-3' exoribonuclease 1.	0.921
dcp2	LOC103396910	ENSCSEP00000026369	ENSCSEP00000012865	Decapping mRNA 2.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.910
dcp2	exosc10	ENSCSEP00000026369	ENSCSEP00000008362	Decapping mRNA 2.	Exosome component 10.	0.587
dcp2	exosc4	ENSCSEP00000026369	ENSCSEP00000016972	Decapping mRNA 2.	Exosome component 4.	0.740
dcp2	lsm1	ENSCSEP00000026369	ENSCSEP00000016448	Decapping mRNA 2.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.910
dcp2	xrn1	ENSCSEP00000026369	ENSCSEP00000033156	Decapping mRNA 2.	5'-3' exoribonuclease 1.	0.995
exosc10	dcp2	ENSCSEP00000008362	ENSCSEP00000026369	Exosome component 10.	Decapping mRNA 2.	0.587
exosc10	exosc4	ENSCSEP00000008362	ENSCSEP00000016972	Exosome component 10.	Exosome component 4.	0.997
exosc10	xrn1	ENSCSEP00000008362	ENSCSEP00000033156	Exosome component 10.	5'-3' exoribonuclease 1.	0.699
exosc4	dcp2	ENSCSEP00000016972	ENSCSEP00000026369	Exosome component 4.	Decapping mRNA 2.	0.740
exosc4	exosc10	ENSCSEP00000016972	ENSCSEP00000008362	Exosome component 4.	Exosome component 10.	0.997
exosc4	xrn1	ENSCSEP00000016972	ENSCSEP00000033156	Exosome component 4.	5'-3' exoribonuclease 1.	0.877
lsm1	LOC103396910	ENSCSEP00000016448	ENSCSEP00000012865	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.900
lsm1	dcp2	ENSCSEP00000016448	ENSCSEP00000026369	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Decapping mRNA 2.	0.910
lsm1	xrn1	ENSCSEP00000016448	ENSCSEP00000033156	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	5'-3' exoribonuclease 1.	0.921
xrn1	LOC103396910	ENSCSEP00000033156	ENSCSEP00000012865	5'-3' exoribonuclease 1.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.921
xrn1	dcp2	ENSCSEP00000033156	ENSCSEP00000026369	5'-3' exoribonuclease 1.	Decapping mRNA 2.	0.995
xrn1	exosc10	ENSCSEP00000033156	ENSCSEP00000008362	5'-3' exoribonuclease 1.	Exosome component 10.	0.699