39 items (Cynoglossus semilaevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103382506	Uncharacterized protein. (184 aa)
	LOC103397625	Corticotropin-releasing factor-binding protein; Binds CRF and inactivates it. May prevent inappropriate pituitary-adrenal stimulation in pregnancy. Belongs to the CRF-binding protein family. (347 aa)
	Gata1	Uncharacterized protein. (289 aa)
	ENSCSEP00000027682	Phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma; Belongs to the PI3/PI4-kinase family. (1074 aa)
	LOC103385263	Rap guanine nucleotide exchange factor (GEF) 3. (792 aa)
	LOC103393075	Aquaporin 8b; Belongs to the MIP/aquaporin (TC 1.A.8) family. (259 aa)
	LOC103385603	RAP1A, member of RAS oncogene family a. (185 aa)
	LOC103379534	WT1 transcription factor a. (1198 aa)
	LOC103392596	Arylalkylamine N-acetyltransferase 2. (209 aa)
	LOC103390262	Hyperpolarization activated cyclic nucleotide-gated potassium channel 1. (940 aa)
	ENSCSEP00000030249	AKAP7_RIRII_bdg domain-containing protein. (89 aa)
	LOC103386699	Uncharacterized protein. (185 aa)
	ENSCSEP00000023995	Rap guanine nucleotide exchange factor (GEF) 1b. (683 aa)
	LOC103395957	Cyclic nucleotide-binding domain-containing protein. (1181 aa)
	ENSCSEP00000022569	WT1 transcription factor b. (303 aa)
	crhbp	Corticotropin releasing hormone binding protein. (360 aa)
	eef2k	Eukaryotic elongation factor 2 kinase. (695 aa)
	LOC103380454	Cyclic nucleotide-binding domain-containing protein. (1183 aa)
	Akap6	A kinase (PRKA) anchor protein 6. (2356 aa)
	LOC103396390	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (262 aa)
	aqp1	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (310 aa)
	LOC103386310	GATA binding protein 1a. (429 aa)
	ENSCSEP00000014361	Uncharacterized protein; Belongs to the potassium channel family. (717 aa)
	LOC103387492	Cytochrome P450, family 1, subfamily B, polypeptide 1; Belongs to the cytochrome P450 family. (559 aa)
	AANAT	Arylalkylamine N-acetyltransferase 1. (202 aa)
	LOC103397946	Uncharacterized protein. (504 aa)
	LOC103379031	Hyperpolarization activated cyclic nucleotide-gated potassium channel 4. (1132 aa)
	LOC103393389	N-acetyltransferase domain-containing protein. (227 aa)
	Igfbp5	Insulin-like growth factor binding protein 5a. (280 aa)
	rapgef2	Rap guanine nucleotide exchange factor (GEF) 2. (1621 aa)
	ENSCSEP00000005321	Cyclic nucleotide-binding domain-containing protein. (1104 aa)
	LOC103378806	Potassium voltage-gated channel, KQT-like subfamily, member 1.1; Belongs to the potassium channel family. (667 aa)
	LOC103384699	Si:rp71-17i16.5; Belongs to the PI3/PI4-kinase family. (640 aa)
	kdm1a	Lysine-specific histone demethylase; Histone demethylase that demethylates both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me; Belongs to the flavin monoamine oxidase family. (879 aa)
	HCN2	Hyperpolarization activated cyclic nucleotide-gated potassium channel 2b. (1051 aa)
	LOC103390502	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (282 aa)
	LOC103382314	Aquaporin 8a, tandem duplicate 1; Belongs to the MIP/aquaporin (TC 1.A.8) family. (240 aa)
	ENSCSEP00000000191	Cytochrome P450, family 1, subfamily C, polypeptide 2; Belongs to the cytochrome P450 family. (526 aa)
	LOC103387737	Cytochrome P450, family 1, subfamily C, polypeptide 1; Belongs to the cytochrome P450 family. (525 aa)

Your Current Organism:

Cynoglossus semilaevis

NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AANAT	LOC103392596	ENSCSEP00000012821	ENSCSEP00000033014	Arylalkylamine N-acetyltransferase 1.	Arylalkylamine N-acetyltransferase 2.	0.901
AANAT	LOC103393389	ENSCSEP00000012821	ENSCSEP00000011790	Arylalkylamine N-acetyltransferase 1.	N-acetyltransferase domain-containing protein.	0.901
Akap6	ENSCSEP00000030249	ENSCSEP00000020304	ENSCSEP00000030249	A kinase (PRKA) anchor protein 6.	AKAP7_RIRII_bdg domain-containing protein.	0.605
Akap6	LOC103385263	ENSCSEP00000020304	ENSCSEP00000026462	A kinase (PRKA) anchor protein 6.	Rap guanine nucleotide exchange factor (GEF) 3.	0.670
ENSCSEP00000014361	LOC103378806	ENSCSEP00000014361	ENSCSEP00000004657	Uncharacterized protein; Belongs to the potassium channel family.	Potassium voltage-gated channel, KQT-like subfamily, member 1.1; Belongs to the potassium channel family.	0.903
ENSCSEP00000023995	LOC103382506	ENSCSEP00000023995	ENSCSEP00000006488	Rap guanine nucleotide exchange factor (GEF) 1b.	Uncharacterized protein.	0.656
ENSCSEP00000023995	LOC103385603	ENSCSEP00000023995	ENSCSEP00000033583	Rap guanine nucleotide exchange factor (GEF) 1b.	RAP1A, member of RAS oncogene family a.	0.656
ENSCSEP00000023995	LOC103386699	ENSCSEP00000023995	ENSCSEP00000029508	Rap guanine nucleotide exchange factor (GEF) 1b.	Uncharacterized protein.	0.656
ENSCSEP00000023995	LOC103397946	ENSCSEP00000023995	ENSCSEP00000012744	Rap guanine nucleotide exchange factor (GEF) 1b.	Uncharacterized protein.	0.899
ENSCSEP00000023995	rapgef2	ENSCSEP00000023995	ENSCSEP00000006760	Rap guanine nucleotide exchange factor (GEF) 1b.	Rap guanine nucleotide exchange factor (GEF) 2.	0.401
ENSCSEP00000030249	Akap6	ENSCSEP00000030249	ENSCSEP00000020304	AKAP7_RIRII_bdg domain-containing protein.	A kinase (PRKA) anchor protein 6.	0.605
LOC103378806	ENSCSEP00000014361	ENSCSEP00000004657	ENSCSEP00000014361	Potassium voltage-gated channel, KQT-like subfamily, member 1.1; Belongs to the potassium channel family.	Uncharacterized protein; Belongs to the potassium channel family.	0.903
LOC103382314	LOC103390502	ENSCSEP00000001447	ENSCSEP00000002920	Aquaporin 8a, tandem duplicate 1; Belongs to the MIP/aquaporin (TC 1.A.8) family.	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.551
LOC103382314	LOC103396390	ENSCSEP00000001447	ENSCSEP00000019499	Aquaporin 8a, tandem duplicate 1; Belongs to the MIP/aquaporin (TC 1.A.8) family.	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.544
LOC103382314	aqp1	ENSCSEP00000001447	ENSCSEP00000019468	Aquaporin 8a, tandem duplicate 1; Belongs to the MIP/aquaporin (TC 1.A.8) family.	Uncharacterized protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.	0.541
LOC103382506	ENSCSEP00000023995	ENSCSEP00000006488	ENSCSEP00000023995	Uncharacterized protein.	Rap guanine nucleotide exchange factor (GEF) 1b.	0.656
LOC103382506	LOC103385263	ENSCSEP00000006488	ENSCSEP00000026462	Uncharacterized protein.	Rap guanine nucleotide exchange factor (GEF) 3.	0.717
LOC103382506	LOC103385603	ENSCSEP00000006488	ENSCSEP00000033583	Uncharacterized protein.	RAP1A, member of RAS oncogene family a.	0.900
LOC103382506	LOC103386699	ENSCSEP00000006488	ENSCSEP00000029508	Uncharacterized protein.	Uncharacterized protein.	0.900
LOC103382506	LOC103397946	ENSCSEP00000006488	ENSCSEP00000012744	Uncharacterized protein.	Uncharacterized protein.	0.964