(24 nodes) SAGA-type complex network (Cynoglossus semilaevis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	taf6l	TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor. (640 aa)
	ENSCSEP00000001197	Uncharacterized protein. (267 aa)
	Trrap	Transformation/transcription domain-associated protein; Belongs to the PI3/PI4-kinase family. (3579 aa)
	kat14	Lysine acetyltransferase 14. (793 aa)
	supt7l	SPT7 like, STAGA complex gamma subunit. (431 aa)
	tada3	Transcriptional adaptor 3 (NGG1 homolog, yeast)-like. (367 aa)
	LOC103381412	Ataxin-7-like protein 3; Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. (175 aa)
	mbip	MAP3K12 binding inhibitory protein 1. (327 aa)
	ENSCSEP00000011154	EFR3 homolog A (S. cerevisiae). (805 aa)
	sgf29	SAGA complex associated factor 29. (281 aa)
	taf5l	TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor. (602 aa)
	taf5	TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (756 aa)
	tada2a	Transcriptional adapter. (445 aa)
	taf12	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (156 aa)
	LOC103393004	Ubiquitin carboxyl-terminal hydrolase. (522 aa)
	yeats2	YEATS domain containing 2. (1440 aa)
	TADA1	Transcriptional adaptor 1. (333 aa)
	supt3h	SPT3 homolog, SAGA and STAGA complex component. (354 aa)
	Supt20h	SPT20 homolog, SAGA complex component. (834 aa)
	taf10	TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (186 aa)
	tada2b	Transcriptional adapter. (525 aa)
	LOC103382048	Ubiquitin carboxyl-terminal hydrolase. (488 aa)
	LOC103395620	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (249 aa)
	zzz3	Zinc finger, ZZ-type containing 3. (951 aa)

Your Current Organism:

Cynoglossus semilaevis

NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCSEP00000001197	LOC103381412	ENSCSEP00000001197	ENSCSEP00000009693	Uncharacterized protein.	Ataxin-7-like protein 3; Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription.	0.875
ENSCSEP00000001197	LOC103382048	ENSCSEP00000001197	ENSCSEP00000031621	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase.	0.931
ENSCSEP00000001197	LOC103393004	ENSCSEP00000001197	ENSCSEP00000023950	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase.	0.931
ENSCSEP00000001197	LOC103395620	ENSCSEP00000001197	ENSCSEP00000032319	Uncharacterized protein.	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.969
ENSCSEP00000001197	Supt20h	ENSCSEP00000001197	ENSCSEP00000029917	Uncharacterized protein.	SPT20 homolog, SAGA complex component.	0.927
ENSCSEP00000001197	TADA1	ENSCSEP00000001197	ENSCSEP00000025919	Uncharacterized protein.	Transcriptional adaptor 1.	0.881
ENSCSEP00000001197	Trrap	ENSCSEP00000001197	ENSCSEP00000001243	Uncharacterized protein.	Transformation/transcription domain-associated protein; Belongs to the PI3/PI4-kinase family.	0.926
ENSCSEP00000001197	sgf29	ENSCSEP00000001197	ENSCSEP00000016463	Uncharacterized protein.	SAGA complex associated factor 29.	0.947
ENSCSEP00000001197	supt3h	ENSCSEP00000001197	ENSCSEP00000027175	Uncharacterized protein.	SPT3 homolog, SAGA and STAGA complex component.	0.946
ENSCSEP00000001197	supt7l	ENSCSEP00000001197	ENSCSEP00000004351	Uncharacterized protein.	SPT7 like, STAGA complex gamma subunit.	0.929
ENSCSEP00000001197	tada2a	ENSCSEP00000001197	ENSCSEP00000020144	Uncharacterized protein.	Transcriptional adapter.	0.939
ENSCSEP00000001197	tada2b	ENSCSEP00000001197	ENSCSEP00000030119	Uncharacterized protein.	Transcriptional adapter.	0.943
ENSCSEP00000001197	tada3	ENSCSEP00000001197	ENSCSEP00000008511	Uncharacterized protein.	Transcriptional adaptor 3 (NGG1 homolog, yeast)-like.	0.968
ENSCSEP00000001197	taf10	ENSCSEP00000001197	ENSCSEP00000030102	Uncharacterized protein.	TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.967
ENSCSEP00000001197	taf12	ENSCSEP00000001197	ENSCSEP00000022576	Uncharacterized protein.	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.947
ENSCSEP00000001197	taf5	ENSCSEP00000001197	ENSCSEP00000016731	Uncharacterized protein.	TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.902
ENSCSEP00000001197	taf5l	ENSCSEP00000001197	ENSCSEP00000016635	Uncharacterized protein.	TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	0.902
ENSCSEP00000001197	taf6l	ENSCSEP00000001197	ENSCSEP00000022960	Uncharacterized protein.	TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.	0.924
ENSCSEP00000001197	yeats2	ENSCSEP00000001197	ENSCSEP00000024506	Uncharacterized protein.	YEATS domain containing 2.	0.655
LOC103381412	ENSCSEP00000001197	ENSCSEP00000009693	ENSCSEP00000001197	Ataxin-7-like protein 3; Component of the transcription regulatory histone acetylation (HAT) complex SAGA, a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates histone H2B. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription.	Uncharacterized protein.	0.875