(102 nodes) SPRY domain network (Cynoglossus semilaevis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103382395	Tripartite motif containing 16. (528 aa)
	ddx1	DEAD (Asp-Glu-Ala-Asp) box helicase 1. (734 aa)
	Ryr2	Uncharacterized protein. (1015 aa)
	TRIM67	Tripartite motif containing 67. (743 aa)
	Ryr3	B30.2/SPRY domain-containing protein. (310 aa)
	LOC103384748	Uncharacterized protein. (547 aa)
	LOC103382540	Uncharacterized protein. (1131 aa)
	SPRYD3	SPRY domain containing 3. (417 aa)
	LOC103390731	Midline 2. (770 aa)
	ENSCSEP00000007247	Si:dkey-219e21.4. (272 aa)
	LOC103380446	Si:dkey-29p10.4. (751 aa)
	ranbp10	RAN binding protein 10. (605 aa)
	LOC103389779	Tripartite motif containing 25, like. (585 aa)
	ENSCSEP00000022094	B30.2/SPRY domain-containing protein. (206 aa)
	LOC103389831	Uncharacterized protein. (1127 aa)
	LOC103378277	Uncharacterized protein. (578 aa)
	ENSCSEP00000023127	Uncharacterized protein. (1415 aa)
	trim25	Tripartite motif containing 25. (610 aa)
	ENSCSEP00000023648	B30.2/SPRY domain-containing protein. (177 aa)
	LOC103398786	Uncharacterized protein. (577 aa)
	LOC103391111	Tripartite motif containing 105. (435 aa)
	ENSCSEP00000025921	Uncharacterized protein. (320 aa)
	LOC103384865	Bloodthirsty-related gene family, member 12. (576 aa)
	LOC103384879	Si:dkey-46i9.6. (699 aa)
	ENSCSEP00000027098	B30.2/SPRY domain-containing protein. (666 aa)
	spsb3	SplA/ryanodine receptor domain and SOCS box containing 3a. (371 aa)
	LOC103393207	Si:ch211-120g10.1. (401 aa)
	LOC103384513	Uncharacterized protein. (567 aa)
	LOC103384933	B30.2/SPRY domain-containing protein. (264 aa)
	LOC103384925	Uncharacterized protein. (540 aa)
	ENSCSEP00000028729	Uncharacterized protein. (388 aa)
	ENSCSEP00000028740	Uncharacterized protein. (472 aa)
	LOC103392715	Uncharacterized protein. (475 aa)
	ENSCSEP00000014037	B30.2/SPRY domain-containing protein. (397 aa)
	LOC103392701	Bloodthirsty-related gene family, member 2. (436 aa)
	LOC103381521	Uncharacterized protein. (1052 aa)
	LOC103391970	Uncharacterized protein. (706 aa)
	ash2l	Ash2 like, histone lysine methyltransferase complex subunit. (592 aa)
	LOC103393414	Bloodthirsty-related gene family, member 30. (555 aa)
	trim9	Tripartite motif containing 9. (737 aa)
	LOC103380293	Uncharacterized protein. (460 aa)
	LOC103382746	Uncharacterized protein. (471 aa)
	ENSCSEP00000011432	SPRY domain-containing protein. (228 aa)
	fsd1	Fibronectin type III and SPRY domain containing 1. (513 aa)
	LOC103389609	Uncharacterized protein. (1501 aa)
	LOC103387326	FinTRIM family, member 14-like. (587 aa)
	ENSCSEP00000010428	B30.2/SPRY domain-containing protein. (311 aa)
	spsb1	SplA/ryanodine receptor domain and SOCS box containing 1. (273 aa)
	LOC103377953	SplA/ryanodine receptor domain and SOCS box containing 4a. (278 aa)
	LOC103390920	Uncharacterized protein. (516 aa)
	ENSCSEP00000009522	Uncharacterized protein. (964 aa)
	LOC103390842	Si:ch211-107m4.1. (612 aa)
	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U like 1. (808 aa)
	LOC103377851	Ryanodine receptor 1b (skeletal). (5023 aa)
	spryd7	SPRY domain containing 7b. (260 aa)
	ENSCSEP00000007718	B30.2/SPRY domain-containing protein. (290 aa)
	LOC103388454	Uncharacterized protein. (597 aa)
	LOC103381311	Uncharacterized protein. (946 aa)
	ENSCSEP00000008764	Uncharacterized protein. (887 aa)
	LOC103390229	B30.2/SPRY domain-containing protein. (467 aa)
	ENSCSEP00000030113	B30.2/SPRY domain-containing protein. (240 aa)
	LOC103381998	B30.2/SPRY domain-containing protein. (256 aa)
	LOC103395492	Tripartite motif containing 47. (473 aa)
	LOC103390261	Uncharacterized protein. (4274 aa)
	LOC103382061	Zgc:194990. (390 aa)
	LOC103390347	Uncharacterized protein. (474 aa)
	ENSCSEP00000031904	Ring finger protein 123. (1246 aa)
	LOC103382152	Tripartite motif containing 65. (539 aa)
	ENSCSEP00000032340	Uncharacterized protein. (409 aa)
	LOC103396593	B30.2/SPRY domain-containing protein. (1345 aa)
	Rspry1	Ring finger and SPRY domain containing 1. (555 aa)
	spryd4	SPRY domain containing 4. (226 aa)
	ranbp9	RAN binding protein 9. (624 aa)
	LOC103385679	Tripartite motif containing 62, tandem duplicate 1. (441 aa)
	LOC103395196	FinTRIM family, member 82. (574 aa)
	ENSCSEP00000000210	B30.2/SPRY domain-containing protein. (299 aa)
	LOC103383408	Uncharacterized protein. (551 aa)
	LOC103383374	Uncharacterized protein. (421 aa)
	LOC103383434	Uncharacterized protein. (612 aa)
	LOC103390467	Tripartite motif containing 69. (554 aa)
	LOC103388187	Si:ch1073-228j22.2. (290 aa)
	LOC103385878	Uncharacterized protein. (526 aa)
	LOC103381820	Uncharacterized protein. (531 aa)
	ENSCSEP00000020293	Uncharacterized protein. (564 aa)
	LOC103386433	Uncharacterized protein. (468 aa)
	LOC103387587	Uncharacterized protein. (547 aa)
	LOC103384111	Uncharacterized protein. (575 aa)
	LOC103395891	SplA/ryanodine receptor domain and SOCS box containing 4a. (270 aa)
	LOC103392873	Zgc:195001. (218 aa)
	ENSCSEP00000018391	Tripartite motif containing 35-13. (449 aa)
	ENSCSEP00000018349	Tripartite motif containing 35-28. (328 aa)
	fbxo45	F-box protein 45. (294 aa)
	LOC103395195	FinTRIM family, member 83. (572 aa)
	MID1	Uncharacterized protein. (752 aa)
	LOC103383873	Bloodthirsty-related gene family, member 1. (585 aa)
	hnrnpu	Heterogeneous nuclear ribonucleoprotein Ub. (834 aa)
	ENSCSEP00000016787	Uncharacterized protein. (281 aa)
	LOC103392028	Midline 1. (789 aa)
	FSD2	Fibronectin type III and SPRY domain containing 2. (628 aa)
	ENSCSEP00000014952	B30.2/SPRY domain-containing protein. (201 aa)
	LOC103392723	Tripartite motif containing 35-12. (524 aa)
	LOC103385203	SPRY domain containing 3. (431 aa)

Your Current Organism:

Cynoglossus semilaevis

NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103377953	spsb3	ENSCSEP00000010339	ENSCSEP00000027527	SplA/ryanodine receptor domain and SOCS box containing 4a.	SplA/ryanodine receptor domain and SOCS box containing 3a.	0.442
LOC103381311	LOC103382061	ENSCSEP00000008472	ENSCSEP00000031537	Uncharacterized protein.	Zgc:194990.	0.417
LOC103382061	LOC103381311	ENSCSEP00000031537	ENSCSEP00000008472	Zgc:194990.	Uncharacterized protein.	0.417
LOC103382061	LOC103389831	ENSCSEP00000031537	ENSCSEP00000022823	Zgc:194990.	Uncharacterized protein.	0.414
LOC103385203	fbxo45	ENSCSEP00000014503	ENSCSEP00000018099	SPRY domain containing 3.	F-box protein 45.	0.633
LOC103388187	spsb3	ENSCSEP00000002550	ENSCSEP00000027527	Si:ch1073-228j22.2.	SplA/ryanodine receptor domain and SOCS box containing 3a.	0.442
LOC103389831	LOC103382061	ENSCSEP00000022823	ENSCSEP00000031537	Uncharacterized protein.	Zgc:194990.	0.414
LOC103392028	MID1	ENSCSEP00000015513	ENSCSEP00000017367	Midline 1.	Uncharacterized protein.	0.901
LOC103395891	spsb3	ENSCSEP00000019114	ENSCSEP00000027527	SplA/ryanodine receptor domain and SOCS box containing 4a.	SplA/ryanodine receptor domain and SOCS box containing 3a.	0.442
MID1	LOC103392028	ENSCSEP00000017367	ENSCSEP00000015513	Uncharacterized protein.	Midline 1.	0.901
SPRYD3	fbxo45	ENSCSEP00000006671	ENSCSEP00000018099	SPRY domain containing 3.	F-box protein 45.	0.633
fbxo45	LOC103385203	ENSCSEP00000018099	ENSCSEP00000014503	F-box protein 45.	SPRY domain containing 3.	0.633
fbxo45	SPRYD3	ENSCSEP00000018099	ENSCSEP00000006671	F-box protein 45.	SPRY domain containing 3.	0.633
spsb1	spsb3	ENSCSEP00000010362	ENSCSEP00000027527	SplA/ryanodine receptor domain and SOCS box containing 1.	SplA/ryanodine receptor domain and SOCS box containing 3a.	0.442
spsb3	LOC103377953	ENSCSEP00000027527	ENSCSEP00000010339	SplA/ryanodine receptor domain and SOCS box containing 3a.	SplA/ryanodine receptor domain and SOCS box containing 4a.	0.442
spsb3	LOC103388187	ENSCSEP00000027527	ENSCSEP00000002550	SplA/ryanodine receptor domain and SOCS box containing 3a.	Si:ch1073-228j22.2.	0.442
spsb3	LOC103395891	ENSCSEP00000027527	ENSCSEP00000019114	SplA/ryanodine receptor domain and SOCS box containing 3a.	SplA/ryanodine receptor domain and SOCS box containing 4a.	0.442
spsb3	spsb1	ENSCSEP00000027527	ENSCSEP00000010362	SplA/ryanodine receptor domain and SOCS box containing 3a.	SplA/ryanodine receptor domain and SOCS box containing 1.	0.442