(4 nodes) Nuclear receptor coactivator, CREB-bp-like, interlocking network (Cynoglossus semilaevis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	EP300	E1A binding protein p300. (2880 aa)
	ENSCSEP00000025441	CREB binding protein b. (2276 aa)
	LOC103384092	CREB binding protein a. (2219 aa)
	ENSCSEP00000010137	E1A binding protein p300 b. (2546 aa)

Your Current Organism:

Cynoglossus semilaevis

NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCSEP00000010137	ENSCSEP00000025441	ENSCSEP00000010137	ENSCSEP00000025441	E1A binding protein p300 b.	CREB binding protein b.	0.926
ENSCSEP00000010137	LOC103384092	ENSCSEP00000010137	ENSCSEP00000018479	E1A binding protein p300 b.	CREB binding protein a.	0.926
ENSCSEP00000025441	ENSCSEP00000010137	ENSCSEP00000025441	ENSCSEP00000010137	CREB binding protein b.	E1A binding protein p300 b.	0.926
ENSCSEP00000025441	EP300	ENSCSEP00000025441	ENSCSEP00000031898	CREB binding protein b.	E1A binding protein p300.	0.926
EP300	ENSCSEP00000025441	ENSCSEP00000031898	ENSCSEP00000025441	E1A binding protein p300.	CREB binding protein b.	0.926
EP300	LOC103384092	ENSCSEP00000031898	ENSCSEP00000018479	E1A binding protein p300.	CREB binding protein a.	0.926
LOC103384092	ENSCSEP00000010137	ENSCSEP00000018479	ENSCSEP00000010137	CREB binding protein a.	E1A binding protein p300 b.	0.926
LOC103384092	EP300	ENSCSEP00000018479	ENSCSEP00000031898	CREB binding protein a.	E1A binding protein p300.	0.926