11 items (Cynoglossus semilaevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	THEM6	Thioesterase superfamily member 6. (211 aa)
	acot8	Acyl-CoA thioesterase 8. (332 aa)
	LOC103396370	Thioesterase superfamily member 6. (203 aa)
	ENSCSEP00000019111	Uncharacterized protein. (212 aa)
	LOC103393640	Acyl-CoA thioesterase 11b. (577 aa)
	acot9	Acyl-CoA thioesterase 9, tandem duplicate 2. (433 aa)
	acot13	Acyl-CoA thioesterase 13. (145 aa)
	hsd17b4	Hydroxysteroid (17-beta) dehydrogenase 4. (725 aa)
	HTD2	Hydroxyacyl-thioester dehydratase type 2. (153 aa)
	acot7	Acyl-CoA thioesterase 7. (377 aa)
	LOC103396777	Uncharacterized protein. (572 aa)

Your Current Organism:

Cynoglossus semilaevis

NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HTD2	acot8	ENSCSEP00000028999	ENSCSEP00000013820	Hydroxyacyl-thioester dehydratase type 2.	Acyl-CoA thioesterase 8.	0.412
LOC103393640	acot13	ENSCSEP00000022894	ENSCSEP00000027224	Acyl-CoA thioesterase 11b.	Acyl-CoA thioesterase 13.	0.536
LOC103393640	acot7	ENSCSEP00000022894	ENSCSEP00000030013	Acyl-CoA thioesterase 11b.	Acyl-CoA thioesterase 7.	0.454
LOC103393640	acot8	ENSCSEP00000022894	ENSCSEP00000013820	Acyl-CoA thioesterase 11b.	Acyl-CoA thioesterase 8.	0.408
LOC103396777	acot13	ENSCSEP00000033662	ENSCSEP00000027224	Uncharacterized protein.	Acyl-CoA thioesterase 13.	0.536
LOC103396777	acot7	ENSCSEP00000033662	ENSCSEP00000030013	Uncharacterized protein.	Acyl-CoA thioesterase 7.	0.462
LOC103396777	acot8	ENSCSEP00000033662	ENSCSEP00000013820	Uncharacterized protein.	Acyl-CoA thioesterase 8.	0.408
acot13	LOC103393640	ENSCSEP00000027224	ENSCSEP00000022894	Acyl-CoA thioesterase 13.	Acyl-CoA thioesterase 11b.	0.536
acot13	LOC103396777	ENSCSEP00000027224	ENSCSEP00000033662	Acyl-CoA thioesterase 13.	Uncharacterized protein.	0.536
acot13	acot7	ENSCSEP00000027224	ENSCSEP00000030013	Acyl-CoA thioesterase 13.	Acyl-CoA thioesterase 7.	0.726
acot13	acot8	ENSCSEP00000027224	ENSCSEP00000013820	Acyl-CoA thioesterase 13.	Acyl-CoA thioesterase 8.	0.511
acot13	acot9	ENSCSEP00000027224	ENSCSEP00000024313	Acyl-CoA thioesterase 13.	Acyl-CoA thioesterase 9, tandem duplicate 2.	0.595
acot7	LOC103393640	ENSCSEP00000030013	ENSCSEP00000022894	Acyl-CoA thioesterase 7.	Acyl-CoA thioesterase 11b.	0.454
acot7	LOC103396777	ENSCSEP00000030013	ENSCSEP00000033662	Acyl-CoA thioesterase 7.	Uncharacterized protein.	0.462
acot7	acot13	ENSCSEP00000030013	ENSCSEP00000027224	Acyl-CoA thioesterase 7.	Acyl-CoA thioesterase 13.	0.726
acot7	acot8	ENSCSEP00000030013	ENSCSEP00000013820	Acyl-CoA thioesterase 7.	Acyl-CoA thioesterase 8.	0.431
acot7	acot9	ENSCSEP00000030013	ENSCSEP00000024313	Acyl-CoA thioesterase 7.	Acyl-CoA thioesterase 9, tandem duplicate 2.	0.443
acot8	HTD2	ENSCSEP00000013820	ENSCSEP00000028999	Acyl-CoA thioesterase 8.	Hydroxyacyl-thioester dehydratase type 2.	0.412
acot8	LOC103393640	ENSCSEP00000013820	ENSCSEP00000022894	Acyl-CoA thioesterase 8.	Acyl-CoA thioesterase 11b.	0.408
acot8	LOC103396777	ENSCSEP00000013820	ENSCSEP00000033662	Acyl-CoA thioesterase 8.	Uncharacterized protein.	0.408