76 items (Cynoglossus semilaevis) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	sec13	SEC13 homolog, nuclear pore and COPII coat complex component; Belongs to the WD repeat SEC13 family. (320 aa)
	cdc40	Cell division cycle 40 homolog (S. cerevisiae). (608 aa)
	eif4a3	Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (406 aa)
	nup93	Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family. (826 aa)
	ENSCSEP00000015502	Uncharacterized protein. (262 aa)
	LOC103395080	POM121 transmembrane nucleoporin. (1185 aa)
	srsf11	Serine and arginine rich splicing factor 11. (465 aa)
	nup58	Nucleoporin 58. (592 aa)
	chtop	Chromatin target of PRMT1a. (233 aa)
	LOC103378294	Serine and arginine rich splicing factor 1a. (250 aa)
	nup42	Nucleoporin 42. (434 aa)
	thoc5	THO complex 5. (679 aa)
	gle1	GLE1 RNA export mediator. (717 aa)
	Srek1	RRM domain-containing protein. (130 aa)
	ENSCSEP00000021809	Uncharacterized protein. (165 aa)
	seh1l	SEH1-like (S. cerevisiae); Belongs to the WD repeat SEC13 family. (383 aa)
	srsf2	Serine and arginine rich splicing factor 2a. (217 aa)
	LOC103392282	RAN binding protein 2. (3022 aa)
	LOC103381772	Uncharacterized protein. (612 aa)
	thoc3	THO complex 3. (322 aa)
	nup85	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (652 aa)
	thoc1	THO complex 1. (659 aa)
	NCBP1	Nuclear cap binding protein subunit 1. (822 aa)
	rbm8a	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (175 aa)
	LOC103395838	Uncharacterized protein. (314 aa)
	nup133	Nucleoporin 133. (1151 aa)
	LOC103396307	RRM domain-containing protein. (453 aa)
	casc3	Casc3 exon junction complex subunit. (815 aa)
	ENSCSEP00000033464	Achalasia, adrenocortical insufficiency, alacrimia. (399 aa)
	thoc6	THO complex 6. (315 aa)
	poldip3	Polymerase (DNA-directed), delta interacting protein 3. (470 aa)
	nup88	Nucleoporin 88. (474 aa)
	nup98	Nucleoporin 98. (1838 aa)
	Srsf7	Serine and arginine rich splicing factor 7a. (140 aa)
	nxf1	Zgc:153681. (651 aa)
	thoc7	THO complex 7. (200 aa)
	NUP62	Nucleoporin 62. (561 aa)
	rae1	Ribonucleic acid export 1. (368 aa)
	nup37	Nucleoporin 37. (364 aa)
	nup50	Nucleoporin 50. (508 aa)
	LOC103381207	Serine and arginine rich splicing factor 5b. (314 aa)
	nup205	Nucleoporin 205. (1991 aa)
	LOC103390134	Serine and arginine rich splicing factor 9. (250 aa)
	slu7	SLU7 homolog, splicing factor. (565 aa)
	dhx38	DEAH (Asp-Glu-Ala-His) box polypeptide 38. (1252 aa)
	DDX39A	DExD-box helicase 39A. (430 aa)
	ALYREF	RRM domain-containing protein. (182 aa)
	nup188	Nucleoporin 188. (1748 aa)
	nup210	Nucleoporin 210. (1835 aa)
	nup160	Nucleoporin 160. (1083 aa)
	nup107	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (884 aa)
	LOC103383573	Uncharacterized protein. (424 aa)
	nup43	Nucleoporin 43. (346 aa)
	LOC103391595	U2 small nuclear RNA auxiliary factor 1. (212 aa)
	SRSF3	Serine and arginine rich splicing factor 3. (204 aa)
	upf3b	UPF3B regulator of nonsense mediated mRNA decay. (476 aa)
	LOC103385776	RRM domain-containing protein. (168 aa)
	LOC103389252	Uncharacterized protein. (227 aa)
	nup35	Nucleoporin NUP53; Functions as a component of the nuclear pore complex (NPC). Belongs to the Nup35 family. (298 aa)
	NUP54	Nucleoporin 54. (584 aa)
	magoh	Mago homolog, exon junction complex subunit. (134 aa)
	LOC103382382	RNA binding protein with serine rich domain 1. (300 aa)
	srrm1	Serine/arginine repetitive matrix 1. (852 aa)
	nxt2	Nuclear transport factor 2-like export factor 2. (143 aa)
	LOC103396557	Translocated promoter region a, nuclear basket protein. (2514 aa)
	nup153	Nucleoporin 153. (1445 aa)
	LOC103393202	Aly/REF export factor. (270 aa)
	nup214	Nup214_FG domain-containing protein. (2068 aa)
	Zc3h11a	Uncharacterized protein. (252 aa)
	Tpr	Translocated promoter region b, nuclear basket protein. (2370 aa)
	Nup155	Nucleoporin 155. (1174 aa)
	ENSCSEP00000026221	Uncharacterized protein. (78 aa)
	Ndc1	NDC1 transmembrane nucleoporin. (654 aa)
	rnps1	RNA binding protein S1, serine-rich domain. (286 aa)
	ncbp2	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (189 aa)
	thoc2	THO complex 2. (1335 aa)

Your Current Organism:

Cynoglossus semilaevis

NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALYREF	DDX39A	ENSCSEP00000024193	ENSCSEP00000024254	RRM domain-containing protein.	DExD-box helicase 39A.	0.959
ALYREF	ENSCSEP00000015502	ENSCSEP00000024193	ENSCSEP00000015502	RRM domain-containing protein.	Uncharacterized protein.	0.809
ALYREF	ENSCSEP00000021809	ENSCSEP00000024193	ENSCSEP00000021809	RRM domain-containing protein.	Uncharacterized protein.	0.467
ALYREF	ENSCSEP00000026221	ENSCSEP00000024193	ENSCSEP00000026221	RRM domain-containing protein.	Uncharacterized protein.	0.649
ALYREF	ENSCSEP00000033464	ENSCSEP00000024193	ENSCSEP00000033464	RRM domain-containing protein.	Achalasia, adrenocortical insufficiency, alacrimia.	0.565
ALYREF	LOC103378294	ENSCSEP00000024193	ENSCSEP00000022407	RRM domain-containing protein.	Serine and arginine rich splicing factor 1a.	0.809
ALYREF	LOC103381207	ENSCSEP00000024193	ENSCSEP00000005886	RRM domain-containing protein.	Serine and arginine rich splicing factor 5b.	0.698
ALYREF	LOC103381772	ENSCSEP00000024193	ENSCSEP00000020627	RRM domain-containing protein.	Uncharacterized protein.	0.631
ALYREF	LOC103382382	ENSCSEP00000024193	ENSCSEP00000000576	RRM domain-containing protein.	RNA binding protein with serine rich domain 1.	0.772
ALYREF	LOC103383573	ENSCSEP00000024193	ENSCSEP00000005322	RRM domain-containing protein.	Uncharacterized protein.	0.959
ALYREF	LOC103385776	ENSCSEP00000024193	ENSCSEP00000001946	RRM domain-containing protein.	RRM domain-containing protein.	0.766
ALYREF	LOC103389252	ENSCSEP00000024193	ENSCSEP00000001655	RRM domain-containing protein.	Uncharacterized protein.	0.586
ALYREF	LOC103390134	ENSCSEP00000024193	ENSCSEP00000024526	RRM domain-containing protein.	Serine and arginine rich splicing factor 9.	0.648
ALYREF	LOC103391595	ENSCSEP00000024193	ENSCSEP00000004999	RRM domain-containing protein.	U2 small nuclear RNA auxiliary factor 1.	0.586
ALYREF	LOC103392282	ENSCSEP00000024193	ENSCSEP00000020800	RRM domain-containing protein.	RAN binding protein 2.	0.811
ALYREF	LOC103393202	ENSCSEP00000024193	ENSCSEP00000027843	RRM domain-containing protein.	Aly/REF export factor.	0.902
ALYREF	LOC103396307	ENSCSEP00000024193	ENSCSEP00000016674	RRM domain-containing protein.	RRM domain-containing protein.	0.467
ALYREF	LOC103396557	ENSCSEP00000024193	ENSCSEP00000028333	RRM domain-containing protein.	Translocated promoter region a, nuclear basket protein.	0.754
ALYREF	NCBP1	ENSCSEP00000024193	ENSCSEP00000019395	RRM domain-containing protein.	Nuclear cap binding protein subunit 1.	0.945
ALYREF	NUP54	ENSCSEP00000024193	ENSCSEP00000001267	RRM domain-containing protein.	Nucleoporin 54.	0.648