46 items (Cynoglossus semilaevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSCSEP00000023740	Uncharacterized protein. (106 aa)
	dhx36	DEAH (Asp-Glu-Ala-His) box polypeptide 36. (1069 aa)
	DDX41	DEAD-box helicase 41. (603 aa)
	Nfkb1	Nuclear factor of kappa light polypeptide gene enhancer in B-cells 1. (906 aa)
	LOC103384092	CREB binding protein a. (2219 aa)
	dhx57	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57. (1446 aa)
	LOC103381659	Signal transducer and activator of transcription. (787 aa)
	nkiras1	NFKB inhibitor interacting Ras-like 1. (191 aa)
	LOC103383968	Uncharacterized protein. (754 aa)
	mfsd1	Major facilitator superfamily domain containing 1. (524 aa)
	LOC103387400	Component of inhibitor of nuclear factor kappa B kinase complex. (741 aa)
	LOC103389815	Uncharacterized protein. (552 aa)
	dhx30	DEAH (Asp-Glu-Ala-His) box helicase 30. (1161 aa)
	ENSCSEP00000027635	DEAH (Asp-Glu-Ala-His) box helicase 9. (1108 aa)
	myd88	Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response. (285 aa)
	YTHDC2	YTH domain containing 2. (1219 aa)
	ENSCSEP00000028832	IRF tryptophan pentad repeat domain-containing protein. (104 aa)
	dhx29	ATP-dependent RNA helicase DHX29; ATP-binding RNA helicase involved in translation initiation. Part of the 43S pre-initiation complex that is required for efficient initiation on mRNAs of higher eukaryotes with structured 5'-UTRs by promoting efficient NTPase-dependent 48S complex formation. Specifically binds to the 40S ribosome near the mRNA entrance. Does not possess a processive helicase activity; Belongs to the DEAD box helicase family. DEAH subfamily. (1359 aa)
	LOC103380734	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a. (308 aa)
	irf7	Interferon regulatory factor 7. (433 aa)
	trim32	Tripartite motif containing 32. (682 aa)
	LOC103393172	Signal transducer and activator of transcription. (786 aa)
	LOC103398848	Protein kinase domain-containing protein. (770 aa)
	mre11	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing. (718 aa)
	nkiras2	NFKB inhibitor interacting Ras-like 2. (192 aa)
	ENSCSEP00000025441	CREB binding protein b. (2276 aa)
	ENSCSEP00000010137	E1A binding protein p300 b. (2546 aa)
	kxd1	KxDL motif containing 1. (180 aa)
	trim13	Tripartite motif containing 13. (430 aa)
	lrrfip2	Leucine rich repeat (in FLII) interacting protein 2. (699 aa)
	EP300	E1A binding protein p300. (2880 aa)
	nfkb2	Nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100). (834 aa)
	tbk1	TANK-binding kinase 1. (711 aa)
	ctnnb1	Catenin (cadherin-associated protein), beta 1. (781 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (151 aa)
	ENSCSEP00000023759	Ubiquitin-like domain-containing protein. (92 aa)
	UBB	Ubiquitin B. (744 aa)
	LOC103377625	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b. (332 aa)
	rps27a	Ribosomal protein S27a. (156 aa)
	REL	REL proto-oncogene, NF-kB subunit. (638 aa)
	LOC103387016	Deltex 4, E3 ubiquitin ligase a. (872 aa)
	ikbkg	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma. (618 aa)
	LOC103385629	V-rel avian reticuloendotheliosis viral oncogene homolog A. (612 aa)
	LOC103382011	Interferon regulatory factor 3. (453 aa)
	ikbkb	Inhibitor of nuclear factor kappa B kinase subunit beta. (743 aa)
	ythdc1	YTH domain containing 1. (679 aa)

Your Current Organism:

Cynoglossus semilaevis

NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX41	ENSCSEP00000027635	ENSCSEP00000020457	ENSCSEP00000027635	DEAD-box helicase 41.	DEAH (Asp-Glu-Ala-His) box helicase 9.	0.728
DDX41	ENSCSEP00000028832	ENSCSEP00000020457	ENSCSEP00000028832	DEAD-box helicase 41.	IRF tryptophan pentad repeat domain-containing protein.	0.447
DDX41	LOC103382011	ENSCSEP00000020457	ENSCSEP00000030488	DEAD-box helicase 41.	Interferon regulatory factor 3.	0.447
DDX41	UBB	ENSCSEP00000020457	ENSCSEP00000025180	DEAD-box helicase 41.	Ubiquitin B.	0.598
DDX41	YTHDC2	ENSCSEP00000020457	ENSCSEP00000028030	DEAD-box helicase 41.	YTH domain containing 2.	0.556
DDX41	dhx29	ENSCSEP00000020457	ENSCSEP00000029162	DEAD-box helicase 41.	ATP-dependent RNA helicase DHX29; ATP-binding RNA helicase involved in translation initiation. Part of the 43S pre-initiation complex that is required for efficient initiation on mRNAs of higher eukaryotes with structured 5'-UTRs by promoting efficient NTPase-dependent 48S complex formation. Specifically binds to the 40S ribosome near the mRNA entrance. Does not possess a processive helicase activity; Belongs to the DEAD box helicase family. DEAH subfamily.	0.641
DDX41	dhx30	ENSCSEP00000020457	ENSCSEP00000015157	DEAD-box helicase 41.	DEAH (Asp-Glu-Ala-His) box helicase 30.	0.578
DDX41	dhx36	ENSCSEP00000020457	ENSCSEP00000021010	DEAD-box helicase 41.	DEAH (Asp-Glu-Ala-His) box polypeptide 36.	0.715
DDX41	dhx57	ENSCSEP00000020457	ENSCSEP00000017744	DEAD-box helicase 41.	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57.	0.560
DDX41	irf7	ENSCSEP00000020457	ENSCSEP00000012191	DEAD-box helicase 41.	Interferon regulatory factor 7.	0.489
DDX41	tbk1	ENSCSEP00000020457	ENSCSEP00000005905	DEAD-box helicase 41.	TANK-binding kinase 1.	0.420
DDX41	trim32	ENSCSEP00000020457	ENSCSEP00000026934	DEAD-box helicase 41.	Tripartite motif containing 32.	0.410
ENSCSEP00000010137	ENSCSEP00000023759	ENSCSEP00000010137	ENSCSEP00000023759	E1A binding protein p300 b.	Ubiquitin-like domain-containing protein.	0.400
ENSCSEP00000010137	ENSCSEP00000025441	ENSCSEP00000010137	ENSCSEP00000025441	E1A binding protein p300 b.	CREB binding protein b.	0.926
ENSCSEP00000010137	ENSCSEP00000028832	ENSCSEP00000010137	ENSCSEP00000028832	E1A binding protein p300 b.	IRF tryptophan pentad repeat domain-containing protein.	0.844
ENSCSEP00000010137	LOC103381659	ENSCSEP00000010137	ENSCSEP00000017209	E1A binding protein p300 b.	Signal transducer and activator of transcription.	0.566
ENSCSEP00000010137	LOC103382011	ENSCSEP00000010137	ENSCSEP00000030488	E1A binding protein p300 b.	Interferon regulatory factor 3.	0.844
ENSCSEP00000010137	LOC103384092	ENSCSEP00000010137	ENSCSEP00000018479	E1A binding protein p300 b.	CREB binding protein a.	0.926
ENSCSEP00000010137	LOC103385629	ENSCSEP00000010137	ENSCSEP00000030025	E1A binding protein p300 b.	V-rel avian reticuloendotheliosis viral oncogene homolog A.	0.731
ENSCSEP00000010137	LOC103393172	ENSCSEP00000010137	ENSCSEP00000026747	E1A binding protein p300 b.	Signal transducer and activator of transcription.	0.566