118 items (Cynoglossus semilaevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Nfkb1	Nuclear factor of kappa light polypeptide gene enhancer in B-cells 1. (906 aa)
	tab3	TGF-beta activated kinase 1 (MAP3K7) binding protein 3. (614 aa)
	APP	Amyloid beta precursor protein. (796 aa)
	LOC103395906	Protein kinase domain-containing protein. (659 aa)
	ptpn23	Protein tyrosine phosphatase, non-receptor type 23, a. (1491 aa)
	LOC103398703	Uncharacterized protein. (393 aa)
	LOC103390066	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (596 aa)
	NLRC5	NLR family CARD domain containing 5. (1809 aa)
	LOC103389831	Uncharacterized protein. (1127 aa)
	LOC103389573	Uncharacterized protein. (1137 aa)
	LOC103380153	Ubiquitin conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family. (154 aa)
	kxd1	KxDL motif containing 1. (180 aa)
	ENSCSEP00000009522	Uncharacterized protein. (964 aa)
	sigirr	Single immunoglobulin and toll-interleukin 1 receptor (TIR) domain. (520 aa)
	LOC103390898	F-box and WD repeat domain containing 11a. (562 aa)
	ikbip	Uncharacterized protein. (370 aa)
	LOC103389609	Uncharacterized protein. (1501 aa)
	ENSCSEP00000010902	Ubiquitin specific peptidase 18; Belongs to the peptidase C19 family. (278 aa)
	LOC103377997	High mobility group box 1b. (207 aa)
	ENSCSEP00000011793	Uncharacterized protein. (131 aa)
	irak4	Protein kinase domain-containing protein. (466 aa)
	LOC103394568	Si:ch211-81a5.5. (472 aa)
	LOC103394592	Si:ch211-81a5.5. (498 aa)
	LOC103396898	Interleukin-1. (246 aa)
	ENSCSEP00000012735	Uncharacterized protein. (89 aa)
	ENSCSEP00000012740	Uncharacterized protein. (69 aa)
	ENSCSEP00000012940	Uncharacterized protein. (246 aa)
	LOC103391968	Zmp:0000000936. (651 aa)
	ENSCSEP00000013129	Uncharacterized protein. (461 aa)
	LOC103391969	Uncharacterized protein. (582 aa)
	mfsd1	Major facilitator superfamily domain containing 1. (524 aa)
	LOC103381521	Uncharacterized protein. (1052 aa)
	ENSCSEP00000000118	Uncharacterized protein. (256 aa)
	LOC112488362	Uncharacterized protein. (673 aa)
	ENSCSEP00000019312	Uncharacterized protein. (418 aa)
	ENSCSEP00000019431	TNF receptor-associated factor. (456 aa)
	usp14	Ubiquitin carboxyl-terminal hydrolase. (491 aa)
	ptpn21	Protein tyrosine phosphatase non-receptor type 21. (1212 aa)
	LOC112486949	Uncharacterized protein. (183 aa)
	sqstm1	Sequestosome 1. (427 aa)
	s100b	S100 calcium binding protein, beta (neural); Belongs to the S-100 family. (94 aa)
	LOC103381311	Uncharacterized protein. (946 aa)
	map3k20	Uncharacterized protein. (803 aa)
	ENSCSEP00000008764	Uncharacterized protein. (887 aa)
	map3k2	Mitogen-activated protein kinase kinase kinase 2. (670 aa)
	hmgb1	High mobility group box 1a. (205 aa)
	n4bp1	Nedd4 binding protein 1. (1054 aa)
	LOC103385496	NACHT domain-containing protein. (892 aa)
	lrrc74b	Leucine rich repeat containing 74B. (417 aa)
	PTPN14	Protein tyrosine phosphatase non-receptor type 14. (1298 aa)
	LOC103397875	Interleukin-1; Belongs to the IL-1 family. (246 aa)
	ikbkb	Inhibitor of nuclear factor kappa B kinase subunit beta. (743 aa)
	LOC103385629	V-rel avian reticuloendotheliosis viral oncogene homolog A. (612 aa)
	LOC103380734	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a. (308 aa)
	LOC103378563	FISNA domain-containing protein. (566 aa)
	LOC103396237	Uncharacterized protein; Belongs to the peptidase C14A family. (464 aa)
	LOC103385536	Pellino E3 ubiquitin protein ligase family member 3. (473 aa)
	ENSCSEP00000028429	NACHT domain-containing protein. (1070 aa)
	map3k7	Mitogen-activated protein kinase kinase kinase 7. (603 aa)
	ENSCSEP00000028133	NACHT domain-containing protein. (686 aa)
	myd88	Myeloid differentiation primary response protein MyD88; Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response. (285 aa)
	ENSCSEP00000027854	Mitogen-activated protein kinase kinase kinase 22. (670 aa)
	LOC103384950	KH and NYN domain containing. (741 aa)
	irak1	Interleukin-1 receptor-associated kinase 1. (692 aa)
	LOC103398848	Protein kinase domain-containing protein. (770 aa)
	irak3	Interleukin-1 receptor-associated kinase 3. (546 aa)
	nkiras2	NFKB inhibitor interacting Ras-like 2. (192 aa)
	LOC103377193	NACHT domain-containing protein. (1097 aa)
	il1rap	Uncharacterized protein. (710 aa)
	ENSCSEP00000025383	Uncharacterized protein. (139 aa)
	ENSCSEP00000025371	zf-C3HC4 domain-containing protein. (63 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (151 aa)
	UBB	Ubiquitin B. (744 aa)
	tab2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2. (738 aa)
	ENSCSEP00000024529	Leucine rich repeat containing 31. (406 aa)
	LOC103377177	Leucine rich repeat containing 34. (396 aa)
	ENSCSEP00000023759	Ubiquitin-like domain-containing protein. (92 aa)
	bcam	Basal cell adhesion molecule (Lutheran blood group). (631 aa)
	tollip	Toll interacting protein. (275 aa)
	LOC103387400	Component of inhibitor of nuclear factor kappa B kinase complex. (741 aa)
	ENSCSEP00000014126	NACHT domain-containing protein. (1125 aa)
	LOC103378689	Uncharacterized protein. (556 aa)
	LOC103378671	Uncharacterized protein. (551 aa)
	tab1	TGF-beta activated kinase 1/MAP3K7 binding protein 1. (506 aa)
	rps27a	Ribosomal protein S27a. (156 aa)
	REL	REL proto-oncogene, NF-kB subunit. (638 aa)
	LOC103381001	Uncharacterized protein. (442 aa)
	LOC103388219	EF-hand domain-containing protein. (107 aa)
	LOC103388218	EF-hand domain-containing protein. (136 aa)
	tonsl	Tonsoku-like, DNA repair protein. (1433 aa)
	traf6	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (576 aa)
	nlrx1	NLR family member X1. (935 aa)
	LOC103391597	Amyloid beta (A4) precursor protein b. (753 aa)
	ENSCSEP00000005131	Uncharacterized protein. (415 aa)
	ikbkg	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma. (618 aa)
	LOC103387098	Pellino E3 ubiquitin protein ligase 1b. (411 aa)
	tbk1	TANK-binding kinase 1. (711 aa)
	ENSCSEP00000006019	EF-hand domain-containing protein. (160 aa)
	ENSCSEP00000006093	Protein tyrosine phosphatase receptor type Q. (1894 aa)
	nfkb2	Nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100). (834 aa)
	lrrc74a	Leucine rich repeat containing 74A. (394 aa)
	peli2	Pellino E3 ubiquitin protein ligase family member 2. (442 aa)
	ENSCSEP00000000365	Uncharacterized protein. (70 aa)
	ENSCSEP00000000363	Uncharacterized protein. (210 aa)
	nlrc3	NLR family, CARD domain containing 3. (1134 aa)
	LOC103377625	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b. (332 aa)
	LOC103382540	Uncharacterized protein. (1131 aa)
	vwc2	Von Willebrand factor C domain containing 2. (333 aa)
	LOC103382819	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (153 aa)
	ENSCSEP00000016086	GSAP-16 domain-containing protein. (168 aa)
	nkiras1	NFKB inhibitor interacting Ras-like 1. (191 aa)
	Lrrc45	Leucine rich repeat containing 45. (603 aa)
	LOC103389709	Uncharacterized protein. (733 aa)
	LOC103389940	Interleukin-1. (267 aa)
	map3k3	Mitogen-activated protein kinase kinase kinase 3. (616 aa)
	ENSCSEP00000023127	Uncharacterized protein. (1415 aa)
	LOC103381695	Si:ch211-183d21.1. (922 aa)
	ENSCSEP00000024899	Uncharacterized protein. (989 aa)

Your Current Organism:

Cynoglossus semilaevis

NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APP	Nfkb1	ENSCSEP00000020589	ENSCSEP00000019963	Amyloid beta precursor protein.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells 1.	0.464
APP	nfkb2	ENSCSEP00000020589	ENSCSEP00000006458	Amyloid beta precursor protein.	Nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100).	0.464
APP	s100b	ENSCSEP00000020589	ENSCSEP00000008433	Amyloid beta precursor protein.	S100 calcium binding protein, beta (neural); Belongs to the S-100 family.	0.499
ENSCSEP00000000365	UBB	ENSCSEP00000000365	ENSCSEP00000025180	Uncharacterized protein.	Ubiquitin B.	0.414
ENSCSEP00000000365	rps27a	ENSCSEP00000000365	ENSCSEP00000002392	Uncharacterized protein.	Ribosomal protein S27a.	0.415
ENSCSEP00000005131	ENSCSEP00000013129	ENSCSEP00000005131	ENSCSEP00000013129	Uncharacterized protein.	Uncharacterized protein.	0.430
ENSCSEP00000005131	LOC103378671	ENSCSEP00000005131	ENSCSEP00000001446	Uncharacterized protein.	Uncharacterized protein.	0.534
ENSCSEP00000005131	LOC103389940	ENSCSEP00000005131	ENSCSEP00000018195	Uncharacterized protein.	Interleukin-1.	0.925
ENSCSEP00000005131	LOC103391968	ENSCSEP00000005131	ENSCSEP00000013102	Uncharacterized protein.	Zmp:0000000936.	0.475
ENSCSEP00000005131	LOC103396898	ENSCSEP00000005131	ENSCSEP00000012188	Uncharacterized protein.	Interleukin-1.	0.994
ENSCSEP00000005131	LOC103397875	ENSCSEP00000005131	ENSCSEP00000032065	Uncharacterized protein.	Interleukin-1; Belongs to the IL-1 family.	0.994
ENSCSEP00000005131	il1rap	ENSCSEP00000005131	ENSCSEP00000025422	Uncharacterized protein.	Uncharacterized protein.	0.945
ENSCSEP00000006093	ptpn23	ENSCSEP00000006093	ENSCSEP00000021945	Protein tyrosine phosphatase receptor type Q.	Protein tyrosine phosphatase, non-receptor type 23, a.	0.401
ENSCSEP00000008764	LOC103387400	ENSCSEP00000008764	ENSCSEP00000014035	Uncharacterized protein.	Component of inhibitor of nuclear factor kappa B kinase complex.	0.428
ENSCSEP00000008764	UBB	ENSCSEP00000008764	ENSCSEP00000025180	Uncharacterized protein.	Ubiquitin B.	0.426
ENSCSEP00000008764	ikbkb	ENSCSEP00000008764	ENSCSEP00000030949	Uncharacterized protein.	Inhibitor of nuclear factor kappa B kinase subunit beta.	0.428
ENSCSEP00000008764	rps27a	ENSCSEP00000008764	ENSCSEP00000002392	Uncharacterized protein.	Ribosomal protein S27a.	0.444
ENSCSEP00000008764	usp14	ENSCSEP00000008764	ENSCSEP00000019625	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase.	0.424
ENSCSEP00000009522	LOC103387400	ENSCSEP00000009522	ENSCSEP00000014035	Uncharacterized protein.	Component of inhibitor of nuclear factor kappa B kinase complex.	0.428
ENSCSEP00000009522	UBB	ENSCSEP00000009522	ENSCSEP00000025180	Uncharacterized protein.	Ubiquitin B.	0.426