26 items (Cynoglossus semilaevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	irak1	Interleukin-1 receptor-associated kinase 1. (692 aa)
	map3k7	Mitogen-activated protein kinase kinase kinase 7. (603 aa)
	LOC103395906	Protein kinase domain-containing protein. (659 aa)
	tab3	TGF-beta activated kinase 1 (MAP3K7) binding protein 3. (614 aa)
	LOC103382819	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (153 aa)
	kxd1	KxDL motif containing 1. (180 aa)
	LOC103380153	Ubiquitin conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family. (154 aa)
	map3k20	Uncharacterized protein. (803 aa)
	LOC103386161	MAPK activated protein kinase 3; Belongs to the protein kinase superfamily. (468 aa)
	LOC103386138	Mitogen-activated protein kinase. (361 aa)
	mapkapk2	MAPK activated protein kinase 2a; Belongs to the protein kinase superfamily. (387 aa)
	ikbkg	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma. (618 aa)
	traf6	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (576 aa)
	MAPKAPK3	MAPK activated protein kinase 3; Belongs to the protein kinase superfamily. (424 aa)
	LOC103382222	Mitogen-activated protein kinase kinase 6. (302 aa)
	LOC103384606	Mitogen-activated protein kinase. (350 aa)
	nod1	Nucleotide-binding oligomerization domain containing 1. (948 aa)
	rps27a	Ribosomal protein S27a. (156 aa)
	tab1	TGF-beta activated kinase 1/MAP3K7 binding protein 1. (506 aa)
	ENSCSEP00000023759	Ubiquitin-like domain-containing protein. (92 aa)
	LOC103392800	Protein kinase domain-containing protein. (336 aa)
	LOC103382962	Mitogen-activated protein kinase. (361 aa)
	tab2	TGF-beta activated kinase 1 (MAP3K7) binding protein 2. (738 aa)
	UBB	Ubiquitin B. (744 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (151 aa)
	ripk2	Receptor-interacting serine-threonine kinase 2. (578 aa)

Your Current Organism:

Cynoglossus semilaevis

NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCSEP00000023759	LOC103380153	ENSCSEP00000023759	ENSCSEP00000009133	Ubiquitin-like domain-containing protein.	Ubiquitin conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family.	0.924
ENSCSEP00000023759	LOC103382819	ENSCSEP00000023759	ENSCSEP00000015663	Ubiquitin-like domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.924
ENSCSEP00000023759	LOC103382962	ENSCSEP00000023759	ENSCSEP00000024508	Ubiquitin-like domain-containing protein.	Mitogen-activated protein kinase.	0.403
ENSCSEP00000023759	LOC103384606	ENSCSEP00000023759	ENSCSEP00000002667	Ubiquitin-like domain-containing protein.	Mitogen-activated protein kinase.	0.403
ENSCSEP00000023759	LOC103386138	ENSCSEP00000023759	ENSCSEP00000007966	Ubiquitin-like domain-containing protein.	Mitogen-activated protein kinase.	0.403
ENSCSEP00000023759	LOC103395906	ENSCSEP00000023759	ENSCSEP00000021062	Ubiquitin-like domain-containing protein.	Protein kinase domain-containing protein.	0.564
ENSCSEP00000023759	UBB	ENSCSEP00000023759	ENSCSEP00000025180	Ubiquitin-like domain-containing protein.	Ubiquitin B.	0.961
ENSCSEP00000023759	ikbkg	ENSCSEP00000023759	ENSCSEP00000005190	Ubiquitin-like domain-containing protein.	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.	0.551
ENSCSEP00000023759	irak1	ENSCSEP00000023759	ENSCSEP00000027065	Ubiquitin-like domain-containing protein.	Interleukin-1 receptor-associated kinase 1.	0.577
ENSCSEP00000023759	map3k20	ENSCSEP00000023759	ENSCSEP00000008580	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.564
ENSCSEP00000023759	map3k7	ENSCSEP00000023759	ENSCSEP00000028402	Ubiquitin-like domain-containing protein.	Mitogen-activated protein kinase kinase kinase 7.	0.585
ENSCSEP00000023759	nod1	ENSCSEP00000023759	ENSCSEP00000021506	Ubiquitin-like domain-containing protein.	Nucleotide-binding oligomerization domain containing 1.	0.583
ENSCSEP00000023759	ripk2	ENSCSEP00000023759	ENSCSEP00000026837	Ubiquitin-like domain-containing protein.	Receptor-interacting serine-threonine kinase 2.	0.442
ENSCSEP00000023759	rps27a	ENSCSEP00000023759	ENSCSEP00000002392	Ubiquitin-like domain-containing protein.	Ribosomal protein S27a.	0.990
ENSCSEP00000023759	tab2	ENSCSEP00000023759	ENSCSEP00000024730	Ubiquitin-like domain-containing protein.	TGF-beta activated kinase 1 (MAP3K7) binding protein 2.	0.736
ENSCSEP00000023759	tab3	ENSCSEP00000023759	ENSCSEP00000020535	Ubiquitin-like domain-containing protein.	TGF-beta activated kinase 1 (MAP3K7) binding protein 3.	0.772
ENSCSEP00000023759	traf6	ENSCSEP00000023759	ENSCSEP00000004790	Ubiquitin-like domain-containing protein.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.917
LOC103380153	ENSCSEP00000023759	ENSCSEP00000009133	ENSCSEP00000023759	Ubiquitin conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin-like domain-containing protein.	0.924
LOC103380153	LOC103382819	ENSCSEP00000009133	ENSCSEP00000015663	Ubiquitin conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.900
LOC103380153	LOC103395906	ENSCSEP00000009133	ENSCSEP00000021062	Ubiquitin conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family.	Protein kinase domain-containing protein.	0.803