23 items (Cynoglossus semilaevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	tomm40	Translocase of outer mitochondrial membrane 40 homolog, like. (406 aa)
	LOC103383373	Translocase of outer mitochondrial membrane 20b. (146 aa)
	tomm6	Translocase of outer mitochondrial membrane 6 homolog (yeast). (64 aa)
	rps27a	Ribosomal protein S27a. (156 aa)
	prkn	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily. (447 aa)
	mfn2	Mitofusin 2; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (759 aa)
	sqstm1	Sequestosome 1. (427 aa)
	ENSCSEP00000010047	Microtubule-associated protein 1 light chain 3 beta. (156 aa)
	LOC103395689	Uncharacterized protein. (331 aa)
	TOMM7	Translocase of outer mitochondrial membrane 7. (55 aa)
	atg5	Autophagy protein 5; Involved in autophagic vesicle formation. (275 aa)
	LOC103390969	Translocase of outer mitochondrial membrane 5 homolog (yeast). (87 aa)
	ENSCSEP00000016086	GSAP-16 domain-containing protein. (168 aa)
	TOMM20	Translocase of outer mitochondrial membrane 20. (157 aa)
	mfn1	Mitofusin 1b; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family. (790 aa)
	ENSCSEP00000023675	Uncharacterized protein. (329 aa)
	vdac1	Voltage-dependent anion channel 1. (283 aa)
	UBB	Ubiquitin B. (744 aa)
	pink1	PTEN induced kinase 1. (572 aa)
	mterf3	Mitochondrial transcription termination factor 3. (459 aa)
	Atg12	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family. (131 aa)
	tomm22	Translocase of outer mitochondrial membrane 22 homolog (yeast). (129 aa)
	map1lc3a	Microtubule-associated protein 1 light chain 3 alpha. (138 aa)

Your Current Organism:

Cynoglossus semilaevis

NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Atg12	ENSCSEP00000010047	ENSCSEP00000029113	ENSCSEP00000010047	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Microtubule-associated protein 1 light chain 3 beta.	0.857
Atg12	ENSCSEP00000016086	ENSCSEP00000029113	ENSCSEP00000016086	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	GSAP-16 domain-containing protein.	0.807
Atg12	atg5	ENSCSEP00000029113	ENSCSEP00000015161	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.999
Atg12	map1lc3a	ENSCSEP00000029113	ENSCSEP00000031109	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Microtubule-associated protein 1 light chain 3 alpha.	0.857
Atg12	mfn1	ENSCSEP00000029113	ENSCSEP00000021160	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Mitofusin 1b; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.741
Atg12	mfn2	ENSCSEP00000029113	ENSCSEP00000007228	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Mitofusin 2; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.741
Atg12	pink1	ENSCSEP00000029113	ENSCSEP00000026950	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	PTEN induced kinase 1.	0.624
Atg12	prkn	ENSCSEP00000029113	ENSCSEP00000006207	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	E3 ubiquitin-protein ligase parkin; Functions within a multiprotein E3 ubiquitin ligase complex, catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins; Belongs to the RBR family. Parkin subfamily.	0.560
Atg12	sqstm1	ENSCSEP00000029113	ENSCSEP00000008395	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Sequestosome 1.	0.863
Atg12	vdac1	ENSCSEP00000029113	ENSCSEP00000023781	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	Voltage-dependent anion channel 1.	0.687
ENSCSEP00000010047	Atg12	ENSCSEP00000010047	ENSCSEP00000029113	Microtubule-associated protein 1 light chain 3 beta.	Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.	0.857
ENSCSEP00000010047	ENSCSEP00000016086	ENSCSEP00000010047	ENSCSEP00000016086	Microtubule-associated protein 1 light chain 3 beta.	GSAP-16 domain-containing protein.	0.871
ENSCSEP00000010047	UBB	ENSCSEP00000010047	ENSCSEP00000025180	Microtubule-associated protein 1 light chain 3 beta.	Ubiquitin B.	0.725
ENSCSEP00000010047	atg5	ENSCSEP00000010047	ENSCSEP00000015161	Microtubule-associated protein 1 light chain 3 beta.	Autophagy protein 5; Involved in autophagic vesicle formation.	0.843
ENSCSEP00000010047	mfn1	ENSCSEP00000010047	ENSCSEP00000021160	Microtubule-associated protein 1 light chain 3 beta.	Mitofusin 1b; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.584
ENSCSEP00000010047	mfn2	ENSCSEP00000010047	ENSCSEP00000007228	Microtubule-associated protein 1 light chain 3 beta.	Mitofusin 2; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.	0.584
ENSCSEP00000010047	pink1	ENSCSEP00000010047	ENSCSEP00000026950	Microtubule-associated protein 1 light chain 3 beta.	PTEN induced kinase 1.	0.428
ENSCSEP00000010047	rps27a	ENSCSEP00000010047	ENSCSEP00000002392	Microtubule-associated protein 1 light chain 3 beta.	Ribosomal protein S27a.	0.569
ENSCSEP00000010047	sqstm1	ENSCSEP00000010047	ENSCSEP00000008395	Microtubule-associated protein 1 light chain 3 beta.	Sequestosome 1.	0.944
ENSCSEP00000010047	vdac1	ENSCSEP00000010047	ENSCSEP00000023781	Microtubule-associated protein 1 light chain 3 beta.	Voltage-dependent anion channel 1.	0.584