29 items (Cynoglossus semilaevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ptbp1	Polypyrimidine tract binding protein 1a. (541 aa)
	polr2l	Polymerase (RNA) II (DNA directed) polypeptide L. (67 aa)
	polr2c	Polymerase (RNA) II (DNA directed) polypeptide C. (275 aa)
	esrp1	Epithelial splicing regulatory protein 1. (688 aa)
	PTBP3	Polypyrimidine tract binding protein 3. (492 aa)
	polr2b	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
	polr2d	Polymerase (RNA) II (DNA directed) polypeptide D. (144 aa)
	polr2f	Polymerase (RNA) II (DNA directed) polypeptide F. (127 aa)
	PTBP2	Polypyrimidine tract binding protein 2a. (518 aa)
	POLR2E	RNA polymerase II subunit E. (229 aa)
	LOC103385130	Heterogeneous nuclear ribonucleoprotein A1a. (350 aa)
	tia1	Uncharacterized protein. (405 aa)
	tial1	TIA1 cytotoxic granule-associated RNA binding protein-like 1. (384 aa)
	LOC103379359	Epithelial splicing regulatory protein 2. (738 aa)
	polr2g	Polymerase (RNA) II (DNA directed) polypeptide G-like. (190 aa)
	NCBP1	Nuclear cap binding protein subunit 1. (822 aa)
	LOC103392281	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (277 aa)
	gtf2f1	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (533 aa)
	LOC103397209	Uncharacterized protein. (387 aa)
	LOC103390060	Cytotoxic granule-associated RNA binding protein 1, like. (385 aa)
	hnrnpm	Heterogeneous nuclear ribonucleoprotein M. (690 aa)
	polr2h	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (155 aa)
	gtf2f2	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (270 aa)
	polr2k	Polymerase (RNA) II (DNA directed) polypeptide K. (58 aa)
	LOC103396554	Uncharacterized protein. (523 aa)
	ncbp2	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (189 aa)
	polr2j	Polymerase (RNA) II (DNA directed) polypeptide J. (117 aa)
	polr2a	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1965 aa)
	polr2i	Polymerase (RNA) II (DNA directed) polypeptide I. (287 aa)

Your Current Organism:

Cynoglossus semilaevis

NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC103379359	hnrnpm	ENSCSEP00000018265	ENSCSEP00000023491	Epithelial splicing regulatory protein 2.	Heterogeneous nuclear ribonucleoprotein M.	0.485
LOC103379359	polr2k	ENSCSEP00000018265	ENSCSEP00000027187	Epithelial splicing regulatory protein 2.	Polymerase (RNA) II (DNA directed) polypeptide K.	0.437
LOC103385130	LOC103390060	ENSCSEP00000011802	ENSCSEP00000022494	Heterogeneous nuclear ribonucleoprotein A1a.	Cytotoxic granule-associated RNA binding protein 1, like.	0.439
LOC103385130	LOC103392281	ENSCSEP00000011802	ENSCSEP00000020853	Heterogeneous nuclear ribonucleoprotein A1a.	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	0.408
LOC103385130	LOC103396554	ENSCSEP00000011802	ENSCSEP00000028103	Heterogeneous nuclear ribonucleoprotein A1a.	Uncharacterized protein.	0.549
LOC103385130	LOC103397209	ENSCSEP00000011802	ENSCSEP00000022242	Heterogeneous nuclear ribonucleoprotein A1a.	Uncharacterized protein.	0.438
LOC103385130	NCBP1	ENSCSEP00000011802	ENSCSEP00000019395	Heterogeneous nuclear ribonucleoprotein A1a.	Nuclear cap binding protein subunit 1.	0.698
LOC103385130	POLR2E	ENSCSEP00000011802	ENSCSEP00000011072	Heterogeneous nuclear ribonucleoprotein A1a.	RNA polymerase II subunit E.	0.569
LOC103385130	PTBP2	ENSCSEP00000011802	ENSCSEP00000010918	Heterogeneous nuclear ribonucleoprotein A1a.	Polypyrimidine tract binding protein 2a.	0.549
LOC103385130	PTBP3	ENSCSEP00000011802	ENSCSEP00000031930	Heterogeneous nuclear ribonucleoprotein A1a.	Polypyrimidine tract binding protein 3.	0.549
LOC103385130	gtf2f1	ENSCSEP00000011802	ENSCSEP00000020911	Heterogeneous nuclear ribonucleoprotein A1a.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.530
LOC103385130	gtf2f2	ENSCSEP00000011802	ENSCSEP00000025766	Heterogeneous nuclear ribonucleoprotein A1a.	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	0.408
LOC103385130	hnrnpm	ENSCSEP00000011802	ENSCSEP00000023491	Heterogeneous nuclear ribonucleoprotein A1a.	Heterogeneous nuclear ribonucleoprotein M.	0.968
LOC103385130	ncbp2	ENSCSEP00000011802	ENSCSEP00000030161	Heterogeneous nuclear ribonucleoprotein A1a.	Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]	0.688
LOC103385130	polr2a	ENSCSEP00000011802	ENSCSEP00000004081	Heterogeneous nuclear ribonucleoprotein A1a.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.560
LOC103385130	polr2b	ENSCSEP00000011802	ENSCSEP00000008316	Heterogeneous nuclear ribonucleoprotein A1a.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.571
LOC103385130	polr2c	ENSCSEP00000011802	ENSCSEP00000002623	Heterogeneous nuclear ribonucleoprotein A1a.	Polymerase (RNA) II (DNA directed) polypeptide C.	0.583
LOC103385130	polr2d	ENSCSEP00000011802	ENSCSEP00000009584	Heterogeneous nuclear ribonucleoprotein A1a.	Polymerase (RNA) II (DNA directed) polypeptide D.	0.589
LOC103385130	polr2f	ENSCSEP00000011802	ENSCSEP00000010669	Heterogeneous nuclear ribonucleoprotein A1a.	Polymerase (RNA) II (DNA directed) polypeptide F.	0.550
LOC103385130	polr2g	ENSCSEP00000011802	ENSCSEP00000018850	Heterogeneous nuclear ribonucleoprotein A1a.	Polymerase (RNA) II (DNA directed) polypeptide G-like.	0.560