57 items (Cynoglossus semilaevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	psmb1	Proteasome subunit beta. (237 aa)
	psmd14	Proteasome 26S subunit, non-ATPase 14. (310 aa)
	psma1	Proteasome subunit alpha type. (266 aa)
	psmd5	Proteasome 26S subunit, non-ATPase 5. (504 aa)
	rps27a	Ribosomal protein S27a. (156 aa)
	LOC103379914	Proteasome subunit alpha type. (261 aa)
	PSMD4	VWFA domain-containing protein. (375 aa)
	psma5	Proteasome subunit alpha type. (241 aa)
	psmd6	Proteasome 26S subunit, non-ATPase 6. (389 aa)
	psmd7	Proteasome 26S subunit, non-ATPase 7. (330 aa)
	psmb6	Proteasome subunit beta. (234 aa)
	psmd13	Proteasome 26S subunit, non-ATPase 13. (391 aa)
	psme4	Proteasome activator subunit 4a. (1847 aa)
	kxd1	KxDL motif containing 1. (180 aa)
	LOC103381415	Proteasome 26S subunit, ATPase 5; Belongs to the AAA ATPase family. (398 aa)
	PSMC5	26S proteasome regulatory subunit 8. (398 aa)
	ENSCSEP00000009900	PI31_Prot_N domain-containing protein. (194 aa)
	ENSCSEP00000011109	Proteasome 26S subunit, non-ATPase 8. (257 aa)
	LOC103394542	Proteasome 26S subunit, non-ATPase 4a. (371 aa)
	LOC103389639	Proteasome subunit beta. (277 aa)
	LOC103399400	ANK_REP_REGION domain-containing protein. (81 aa)
	chek2	Checkpoint kinase 2. (550 aa)
	psmd3	Proteasome 26S subunit, non-ATPase 3. (520 aa)
	psme1	Proteasome activator subunit 1. (249 aa)
	chek1	Checkpoint kinase 1; Belongs to the protein kinase superfamily. (488 aa)
	LOC103381548	Uncharacterized protein. (1808 aa)
	psmb2	Proteasome subunit beta. (187 aa)
	psma8	Proteasome subunit alpha type. (251 aa)
	psma2	Proteasome subunit alpha type. (234 aa)
	psma3	Proteasome subunit alpha type. (255 aa)
	psmc4	Proteasome 26S subunit, ATPase 4; Belongs to the AAA ATPase family. (418 aa)
	psmd12	Proteasome 26S subunit, non-ATPase 12. (456 aa)
	LOC103398645	Proteasome subunit alpha type. (261 aa)
	LOC103393606	PCI domain-containing protein. (422 aa)
	psmd1	26S proteasome non-ATPase regulatory subunit 1; Component of the 26S proteasome, a multiprotein complex involved in the ATP-dependent degradation of ubiquitinated proteins. This complex plays a key role in the maintenance of protein homeostasis by removing misfolded or damaged proteins, which could impair cellular functions, and by removing proteins whose functions are no longer required. Therefore, the proteasome participates in numerous cellular processes, including cell cycle progression, apoptosis, or DNA damage repair; Belongs to the proteasome subunit S1 family. (959 aa)
	LOC103378260	Proteasome subunit alpha type. (267 aa)
	psmd9	Proteasome 26S subunit, non-ATPase 9. (212 aa)
	LOC103381864	Proteasome 26S subunit, non-ATPase 11b. (422 aa)
	psme2	Proteasome activator subunit 2. (245 aa)
	psme3	Proteasome activator subunit 3. (240 aa)
	Cdc25b	Rhodanese domain-containing protein. (568 aa)
	psmc6	Proteasome 26S subunit, ATPase 6; Belongs to the AAA ATPase family. (407 aa)
	UBB	Ubiquitin B. (744 aa)
	psmb3	Proteasome subunit beta. (205 aa)
	LOC103382982	Proteasome 26S subunit, ATPase 2; Belongs to the AAA ATPase family. (433 aa)
	LOC103389149	Proteasome subunit beta. (276 aa)
	psmd10	Proteasome 26S subunit, non-ATPase 10. (209 aa)
	psmc1	Proteasome 26S subunit, ATPase 1b; Belongs to the AAA ATPase family. (440 aa)
	psma6	Proteasome subunit alpha type. (246 aa)
	psmb8	Proteasome subunit beta. (271 aa)
	LOC103393839	Proteasome subunit beta 13a. (281 aa)
	LOC103393840	Proteasome subunit beta 12. (217 aa)
	psmb4	Proteasome subunit beta; Belongs to the peptidase T1B family. (226 aa)
	psmc3	Proteasome 26S subunit, ATPase 3; Belongs to the AAA ATPase family. (404 aa)
	LOC103386842	Proteasome inhibitor subunit 1. (280 aa)
	LOC103396604	Proteasome subunit beta. (278 aa)
	PSMB11	Proteasome subunit beta. (304 aa)

Your Current Organism:

Cynoglossus semilaevis

NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Cdc25b	ENSCSEP00000011109	ENSCSEP00000024495	ENSCSEP00000011109	Rhodanese domain-containing protein.	Proteasome 26S subunit, non-ATPase 8.	0.587
Cdc25b	LOC103381415	ENSCSEP00000024495	ENSCSEP00000009706	Rhodanese domain-containing protein.	Proteasome 26S subunit, ATPase 5; Belongs to the AAA ATPase family.	0.511
Cdc25b	LOC103381548	ENSCSEP00000024495	ENSCSEP00000015994	Rhodanese domain-containing protein.	Uncharacterized protein.	0.480
Cdc25b	LOC103382982	ENSCSEP00000024495	ENSCSEP00000026183	Rhodanese domain-containing protein.	Proteasome 26S subunit, ATPase 2; Belongs to the AAA ATPase family.	0.596
Cdc25b	PSMC5	ENSCSEP00000024495	ENSCSEP00000009845	Rhodanese domain-containing protein.	26S proteasome regulatory subunit 8.	0.511
Cdc25b	UBB	ENSCSEP00000024495	ENSCSEP00000025180	Rhodanese domain-containing protein.	Ubiquitin B.	0.659
Cdc25b	chek1	ENSCSEP00000024495	ENSCSEP00000015903	Rhodanese domain-containing protein.	Checkpoint kinase 1; Belongs to the protein kinase superfamily.	0.998
Cdc25b	chek2	ENSCSEP00000024495	ENSCSEP00000012603	Rhodanese domain-containing protein.	Checkpoint kinase 2.	0.995
Cdc25b	psmc1	ENSCSEP00000024495	ENSCSEP00000029539	Rhodanese domain-containing protein.	Proteasome 26S subunit, ATPase 1b; Belongs to the AAA ATPase family.	0.608
Cdc25b	psmc3	ENSCSEP00000024495	ENSCSEP00000030756	Rhodanese domain-containing protein.	Proteasome 26S subunit, ATPase 3; Belongs to the AAA ATPase family.	0.597
Cdc25b	psmd12	ENSCSEP00000024495	ENSCSEP00000019196	Rhodanese domain-containing protein.	Proteasome 26S subunit, non-ATPase 12.	0.596
Cdc25b	psmd13	ENSCSEP00000024495	ENSCSEP00000009223	Rhodanese domain-containing protein.	Proteasome 26S subunit, non-ATPase 13.	0.601
Cdc25b	psmd14	ENSCSEP00000024495	ENSCSEP00000001318	Rhodanese domain-containing protein.	Proteasome 26S subunit, non-ATPase 14.	0.597
Cdc25b	psmd3	ENSCSEP00000024495	ENSCSEP00000012612	Rhodanese domain-containing protein.	Proteasome 26S subunit, non-ATPase 3.	0.596
Cdc25b	psmd6	ENSCSEP00000024495	ENSCSEP00000008783	Rhodanese domain-containing protein.	Proteasome 26S subunit, non-ATPase 6.	0.622
Cdc25b	psme1	ENSCSEP00000024495	ENSCSEP00000015082	Rhodanese domain-containing protein.	Proteasome activator subunit 1.	0.412
Cdc25b	psme2	ENSCSEP00000024495	ENSCSEP00000023968	Rhodanese domain-containing protein.	Proteasome activator subunit 2.	0.409
Cdc25b	psme3	ENSCSEP00000024495	ENSCSEP00000024007	Rhodanese domain-containing protein.	Proteasome activator subunit 3.	0.530
Cdc25b	psme4	ENSCSEP00000024495	ENSCSEP00000009457	Rhodanese domain-containing protein.	Proteasome activator subunit 4a.	0.480
Cdc25b	rps27a	ENSCSEP00000024495	ENSCSEP00000002392	Rhodanese domain-containing protein.	Ribosomal protein S27a.	0.621