STRINGSTRING
cstf3 cstf3 DDX39A DDX39A slu7 slu7 LOC103390134 LOC103390134 rnps1 rnps1 sympk sympk Zc3h11a Zc3h11a LOC103393202 LOC103393202 ENSCSEP00000029213 ENSCSEP00000029213 cpsf4 cpsf4 ncbp2 ncbp2 ENSCSEP00000030885 ENSCSEP00000030885 Srsf6 Srsf6 fip1l1 fip1l1 LOC103399099 LOC103399099 poldip3 poldip3 thoc6 thoc6 srsf5 srsf5 srrm1 srrm1 LOC103382382 LOC103382382 magoh magoh ENSCSEP00000001120 ENSCSEP00000001120 LOC103389252 LOC103389252 pabpn1l pabpn1l LOC103385776 LOC103385776 nudt21 nudt21 LOC103380998 LOC103380998 CPSF7 CPSF7 CPSF3 CPSF3 upf3b upf3b SRSF3 SRSF3 ENSCSEP00000004020 ENSCSEP00000004020 LOC103391595 LOC103391595 LOC103383573 LOC103383573 LOC103381207 LOC103381207 cpsf2 cpsf2 dhx38 dhx38 srsf11 srsf11 thoc2 thoc2 LOC103392513 LOC103392513 cdc40 cdc40 eif4a3 eif4a3 Srsf7 Srsf7 ENSCSEP00000009916 ENSCSEP00000009916 pcf11 pcf11 thoc7 thoc7 chtop chtop WDR33 WDR33 clp1 clp1 pabpn1 pabpn1 cpsf6 cpsf6 ENSCSEP00000015502 ENSCSEP00000015502 casc3 casc3 LOC103393948 LOC103393948 LOC103396307 LOC103396307 LOC103395838 LOC103395838 rbm8a rbm8a NCBP1 NCBP1 thoc1 thoc1 thoc3 thoc3 cstf1 cstf1 srsf2 srsf2 cpsf1 cpsf1 ENSCSEP00000021809 ENSCSEP00000021809 Srek1 Srek1 thoc5 thoc5 LOC103378294 LOC103378294
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
cstf3Cleavage stimulation factor, 3' pre-RNA, subunit 3. (715 aa)
DDX39ADExD-box helicase 39A. (430 aa)
slu7SLU7 homolog, splicing factor. (565 aa)
LOC103390134Serine and arginine rich splicing factor 9. (250 aa)
rnps1RNA binding protein S1, serine-rich domain. (286 aa)
sympkSymplekin. (1229 aa)
Zc3h11aUncharacterized protein. (252 aa)
LOC103393202Aly/REF export factor. (270 aa)
ENSCSEP00000029213U2 small nuclear RNA auxiliary factor 2a. (388 aa)
cpsf4Cleavage and polyadenylation specific factor 4. (305 aa)
ncbp2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (189 aa)
ENSCSEP00000030885Serine and arginine rich splicing factor 6. (133 aa)
Srsf6Serine and arginine rich splicing factor 6. (238 aa)
fip1l1FIP1 like 1b (S. cerevisiae). (551 aa)
LOC103399099RRM domain-containing protein. (102 aa)
poldip3Polymerase (DNA-directed), delta interacting protein 3. (470 aa)
thoc6THO complex 6. (315 aa)
srsf5Serine and arginine rich splicing factor 5a. (313 aa)
srrm1Serine/arginine repetitive matrix 1. (852 aa)
LOC103382382RNA binding protein with serine rich domain 1. (300 aa)
magohMago homolog, exon junction complex subunit. (134 aa)
ENSCSEP00000001120Poly(A) polymerase gamma. (705 aa)
LOC103389252Uncharacterized protein. (227 aa)
pabpn1lEPABP2. (260 aa)
LOC103385776RRM domain-containing protein. (168 aa)
nudt21Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (229 aa)
LOC103380998Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (648 aa)
CPSF7Cleavage and polyadenylation specific factor 7. (419 aa)
CPSF3Cleavage and polyadenylation specific factor 3. (690 aa)
upf3bUPF3B regulator of nonsense mediated mRNA decay. (476 aa)
SRSF3Serine and arginine rich splicing factor 3. (204 aa)
ENSCSEP00000004020RRM domain-containing protein. (456 aa)
LOC103391595U2 small nuclear RNA auxiliary factor 1. (212 aa)
LOC103383573Uncharacterized protein. (424 aa)
LOC103381207Serine and arginine rich splicing factor 5b. (314 aa)
cpsf2Cleavage and polyadenylation specificity factor subunit 2. (795 aa)
dhx38DEAH (Asp-Glu-Ala-His) box polypeptide 38. (1252 aa)
srsf11Serine and arginine rich splicing factor 11. (465 aa)
thoc2THO complex 2. (1335 aa)
LOC103392513U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (491 aa)
cdc40Cell division cycle 40 homolog (S. cerevisiae). (608 aa)
eif4a3Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family. (406 aa)
Srsf7Serine and arginine rich splicing factor 7a. (140 aa)
ENSCSEP00000009916CID domain-containing protein. (99 aa)
pcf11Uncharacterized protein. (1110 aa)
thoc7THO complex 7. (200 aa)
chtopChromatin target of PRMT1a. (233 aa)
WDR33WD repeat domain 33. (1061 aa)
clp1Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...] (441 aa)
pabpn1Poly(A) binding protein, nuclear 1. (305 aa)
cpsf6Cleavage and polyadenylation specific factor 6. (586 aa)
ENSCSEP00000015502Uncharacterized protein. (262 aa)
casc3Casc3 exon junction complex subunit. (815 aa)
LOC103393948Serine and arginine rich splicing factor 4. (360 aa)
LOC103396307RRM domain-containing protein. (453 aa)
LOC103395838Uncharacterized protein. (314 aa)
rbm8aRNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. (175 aa)
NCBP1Nuclear cap binding protein subunit 1. (822 aa)
thoc1THO complex 1. (659 aa)
thoc3THO complex 3. (322 aa)
cstf1Cleavage stimulation factor, 3' pre-RNA, subunit 1. (431 aa)
srsf2Serine and arginine rich splicing factor 2a. (217 aa)
cpsf1Cleavage and polyadenylation specific factor 1. (1414 aa)
ENSCSEP00000021809Uncharacterized protein. (165 aa)
Srek1RRM domain-containing protein. (130 aa)
thoc5THO complex 5. (679 aa)
LOC103378294Serine and arginine rich splicing factor 1a. (250 aa)
Your Current Organism:
Cynoglossus semilaevis
NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole
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