46 items (Cynoglossus semilaevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC103390756	Retinoblastoma binding protein 4. (424 aa)
	mnat1	MNAT1 component of CDK activating kinase. (311 aa)
	taf1c	Uncharacterized protein. (1105 aa)
	polr2l	Polymerase (RNA) II (DNA directed) polypeptide L. (67 aa)
	dmtf1	Cyclin D binding myb-like transcription factor 1. (660 aa)
	chd3	Chromodomain helicase DNA binding protein 3. (1778 aa)
	polr1e	RNA polymerase I subunit E. (402 aa)
	gatad2a	GATA zinc finger domain containing 2Ab. (645 aa)
	cd3eap	CD3e molecule, epsilon associated protein. (380 aa)
	ercc2	Excision repair cross-complementation group 2. (760 aa)
	ENSCSEP00000009560	TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B. (509 aa)
	znrd1	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (115 aa)
	gtf2h1	General transcription factor IIH, polypeptide 1. (551 aa)
	polr2f	Polymerase (RNA) II (DNA directed) polypeptide F. (127 aa)
	POLR2E	RNA polymerase II subunit E. (229 aa)
	mta1	Metastasis associated 1. (540 aa)
	Mta1	Uncharacterized protein. (117 aa)
	ercc6	Excision repair cross-complementation group 6. (1444 aa)
	LOC103379196	Retinoblastoma binding protein 4, like. (442 aa)
	ttf1	Si:ch73-376l24.2. (513 aa)
	polr1b	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1134 aa)
	twistnb	SHS2_Rpb7-N domain-containing protein. (373 aa)
	mta3	Metastasis associated 1 family, member 3. (700 aa)
	LOC103381809	TATA box binding protein like 2. (450 aa)
	LOC103391146	Germ cell nuclear acidic peptidase. (587 aa)
	ENSCSEP00000022825	Uncharacterized protein. (817 aa)
	Mta2	Metastasis associated 1 family, member 2. (648 aa)
	LOC103398717	Upstream binding transcription factor, like. (676 aa)
	gtf2h3	General transcription factor IIH, polypeptide 3. (327 aa)
	polr2h	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (155 aa)
	ENSCSEP00000024126	GATA zinc finger domain containing 2B. (596 aa)
	LOC103397561	General transcription factor IIH subunit. (414 aa)
	cdk7	Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (344 aa)
	ercc3	Excision repair cross-complementation group 3. (785 aa)
	ENSCSEP00000025900	Autoimmune regulator. (416 aa)
	LOC103393776	Chromodomain helicase DNA binding protein 4a. (1810 aa)
	polr2k	Polymerase (RNA) II (DNA directed) polypeptide K. (58 aa)
	Polr1c	RNA polymerase I and III subunit C. (346 aa)
	chd5	Uncharacterized protein. (1813 aa)
	gtf2h4	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (461 aa)
	tbp	TATA box binding protein. (355 aa)
	chd4	Uncharacterized protein. (1819 aa)
	polr1a	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1628 aa)
	Rrn3	RRN3 homolog, RNA polymerase I transcription factor. (217 aa)
	taf1a	TATA box binding protein (TBP)-associated factor, RNA polymerase I, A. (430 aa)
	ubtf	Upstream binding transcription factor. (737 aa)

Your Current Organism:

Cynoglossus semilaevis

NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCSEP00000009560	LOC103381809	ENSCSEP00000009560	ENSCSEP00000019238	TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B.	TATA box binding protein like 2.	0.833
ENSCSEP00000009560	LOC103391146	ENSCSEP00000009560	ENSCSEP00000022506	TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B.	Germ cell nuclear acidic peptidase.	0.924
ENSCSEP00000009560	LOC103398717	ENSCSEP00000009560	ENSCSEP00000022936	TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B.	Upstream binding transcription factor, like.	0.597
ENSCSEP00000009560	POLR2E	ENSCSEP00000009560	ENSCSEP00000011072	TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B.	RNA polymerase II subunit E.	0.546
ENSCSEP00000009560	Polr1c	ENSCSEP00000009560	ENSCSEP00000028317	TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B.	RNA polymerase I and III subunit C.	0.566
ENSCSEP00000009560	Rrn3	ENSCSEP00000009560	ENSCSEP00000032057	TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B.	RRN3 homolog, RNA polymerase I transcription factor.	0.776
ENSCSEP00000009560	cd3eap	ENSCSEP00000009560	ENSCSEP00000009212	TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B.	CD3e molecule, epsilon associated protein.	0.519
ENSCSEP00000009560	dmtf1	ENSCSEP00000009560	ENSCSEP00000006668	TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B.	Cyclin D binding myb-like transcription factor 1.	0.546
ENSCSEP00000009560	polr1a	ENSCSEP00000009560	ENSCSEP00000031564	TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.616
ENSCSEP00000009560	polr1b	ENSCSEP00000009560	ENSCSEP00000013295	TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.628
ENSCSEP00000009560	polr1e	ENSCSEP00000009560	ENSCSEP00000007963	TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B.	RNA polymerase I subunit E.	0.612
ENSCSEP00000009560	polr2h	ENSCSEP00000009560	ENSCSEP00000023951	TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.549
ENSCSEP00000009560	polr2k	ENSCSEP00000009560	ENSCSEP00000027187	TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B.	Polymerase (RNA) II (DNA directed) polypeptide K.	0.557
ENSCSEP00000009560	taf1a	ENSCSEP00000009560	ENSCSEP00000032406	TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B.	TATA box binding protein (TBP)-associated factor, RNA polymerase I, A.	0.650
ENSCSEP00000009560	taf1c	ENSCSEP00000009560	ENSCSEP00000002339	TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B.	Uncharacterized protein.	0.792
ENSCSEP00000009560	tbp	ENSCSEP00000009560	ENSCSEP00000030744	TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B.	TATA box binding protein.	0.833
ENSCSEP00000009560	ttf1	ENSCSEP00000009560	ENSCSEP00000012487	TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B.	Si:ch73-376l24.2.	0.629
ENSCSEP00000009560	twistnb	ENSCSEP00000009560	ENSCSEP00000013971	TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B.	SHS2_Rpb7-N domain-containing protein.	0.643
ENSCSEP00000009560	ubtf	ENSCSEP00000009560	ENSCSEP00000033511	TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B.	Upstream binding transcription factor.	0.636
ENSCSEP00000009560	znrd1	ENSCSEP00000009560	ENSCSEP00000009863	TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.551