STRINGSTRING
gtf2h4 gtf2h4 ENSCSEP00000014187 ENSCSEP00000014187 mta3 mta3 LOC103381660 LOC103381660 LOC103396322 LOC103396322 LOC103381709 LOC103381709 LOC103381809 LOC103381809 ENSCSEP00000019811 ENSCSEP00000019811 LOC103395940 LOC103395940 tbpl1 tbpl1 LOC103391146 LOC103391146 ENSCSEP00000022787 ENSCSEP00000022787 ENSCSEP00000022825 ENSCSEP00000022825 Mta2 Mta2 LOC103398717 LOC103398717 ENSCSEP00000023029 ENSCSEP00000023029 ENSCSEP00000023037 ENSCSEP00000023037 HIST1H4J HIST1H4J ENSCSEP00000023079 ENSCSEP00000023079 ENSCSEP00000023097 ENSCSEP00000023097 gtf2h3 gtf2h3 polr2h polr2h ENSCSEP00000024126 ENSCSEP00000024126 LOC103397561 LOC103397561 cdk7 cdk7 ercc3 ercc3 ENSCSEP00000025900 ENSCSEP00000025900 LOC103389097 LOC103389097 LOC103393168 LOC103393168 LOC103393776 LOC103393776 polr2k polr2k LOC103394976 LOC103394976 Polr1c Polr1c chd5 chd5 chd4 chd4 tbp tbp LOC103395050 LOC103395050 LOC103385172 LOC103385172 LOC103390756 LOC103390756 ENSCSEP00000001650 ENSCSEP00000001650 mnat1 mnat1 taf1c taf1c polr2l polr2l ENSCSEP00000005051 ENSCSEP00000005051 LOC103381127 LOC103381127 ENSCSEP00000006274 ENSCSEP00000006274 ENSCSEP00000006303 ENSCSEP00000006303 ENSCSEP00000006355 ENSCSEP00000006355 ENSCSEP00000006378 ENSCSEP00000006378 dmtf1 dmtf1 chd3 chd3 polr1e polr1e LOC103399996 LOC103399996 gatad2a gatad2a cd3eap cd3eap ercc2 ercc2 ENSCSEP00000009560 ENSCSEP00000009560 znrd1 znrd1 gtf2h1 gtf2h1 LOC103399096 LOC103399096 ENSCSEP00000010388 ENSCSEP00000010388 ENSCSEP00000010656 ENSCSEP00000010656 polr2f polr2f ENSCSEP00000010689 ENSCSEP00000010689 ENSCSEP00000010737 ENSCSEP00000010737 POLR2E POLR2E mta1 mta1 Mta1 Mta1 ercc6 ercc6 LOC103379196 LOC103379196 LOC103396892 LOC103396892 ttf1 ttf1 ENSCSEP00000012570 ENSCSEP00000012570 polr1b polr1b ubtf ubtf taf1a taf1a LOC103397872 LOC103397872 Rrn3 Rrn3 polr1a polr1a H3-3B H3-3B ENSCSEP00000031260 ENSCSEP00000031260 twistnb twistnb ENSCSEP00000014012 ENSCSEP00000014012 ENSCSEP00000014019 ENSCSEP00000014019 H3C14 H3C14 ENSCSEP00000014113 ENSCSEP00000014113
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
gtf2h4General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (461 aa)
ENSCSEP00000014187Histone H3; Belongs to the histone H3 family. (113 aa)
mta3Metastasis associated 1 family, member 3. (700 aa)
LOC103381660Caveolae associated protein 1b. (468 aa)
LOC103396322Histone H2B; Belongs to the histone H2B family. (116 aa)
LOC103381709Histone H3; Belongs to the histone H3 family. (136 aa)
LOC103381809TATA box binding protein like 2. (450 aa)
ENSCSEP00000019811Uncharacterized protein. (185 aa)
LOC103395940Uncharacterized protein. (242 aa)
tbpl1TBP-like 1. (194 aa)
LOC103391146Germ cell nuclear acidic peptidase. (587 aa)
ENSCSEP00000022787Histone H2A; Belongs to the histone H2A family. (130 aa)
ENSCSEP00000022825Uncharacterized protein. (817 aa)
Mta2Metastasis associated 1 family, member 2. (648 aa)
LOC103398717Upstream binding transcription factor, like. (676 aa)
ENSCSEP00000023029Histone H2B; Belongs to the histone H2B family. (113 aa)
ENSCSEP00000023037annotation not available (67 aa)
HIST1H4JHistone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (93 aa)
ENSCSEP00000023079Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (93 aa)
ENSCSEP00000023097Histone H2B; Belongs to the histone H2B family. (114 aa)
gtf2h3General transcription factor IIH, polypeptide 3. (327 aa)
polr2hDNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (155 aa)
ENSCSEP00000024126GATA zinc finger domain containing 2B. (596 aa)
LOC103397561General transcription factor IIH subunit. (414 aa)
cdk7Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (344 aa)
ercc3Excision repair cross-complementation group 3. (785 aa)
ENSCSEP00000025900Autoimmune regulator. (416 aa)
LOC103389097MBD domain-containing protein. (267 aa)
LOC103393168Caveolae associated protein 1a. (420 aa)
LOC103393776Chromodomain helicase DNA binding protein 4a. (1810 aa)
polr2kPolymerase (RNA) II (DNA directed) polypeptide K. (58 aa)
LOC103394976Histone H3; Belongs to the histone H3 family. (136 aa)
Polr1cRNA polymerase I and III subunit C. (346 aa)
chd5Uncharacterized protein. (1813 aa)
chd4Uncharacterized protein. (1819 aa)
tbpTATA box binding protein. (355 aa)
LOC103395050Histone H2A; Belongs to the histone H2A family. (131 aa)
LOC103385172Histone H2A; Belongs to the histone H2A family. (128 aa)
LOC103390756Retinoblastoma binding protein 4. (424 aa)
ENSCSEP00000001650Uncharacterized protein. (183 aa)
mnat1MNAT1 component of CDK activating kinase. (311 aa)
taf1cUncharacterized protein. (1105 aa)
polr2lPolymerase (RNA) II (DNA directed) polypeptide L. (67 aa)
ENSCSEP00000005051Histone H2B; Belongs to the histone H2B family. (112 aa)
LOC103381127Histone H2A; Belongs to the histone H2A family. (128 aa)
ENSCSEP00000006274Histone H2B; Belongs to the histone H2B family. (114 aa)
ENSCSEP00000006303Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (95 aa)
ENSCSEP00000006355Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (147 aa)
ENSCSEP00000006378Histone H3; Belongs to the histone H3 family. (126 aa)
dmtf1Cyclin D binding myb-like transcription factor 1. (660 aa)
chd3Chromodomain helicase DNA binding protein 3. (1778 aa)
polr1eRNA polymerase I subunit E. (402 aa)
LOC103399996Methyl-CpG binding domain protein 3a. (274 aa)
gatad2aGATA zinc finger domain containing 2Ab. (645 aa)
cd3eapCD3e molecule, epsilon associated protein. (380 aa)
ercc2Excision repair cross-complementation group 2. (760 aa)
ENSCSEP00000009560TATA box binding protein (Tbp)-associated factor, RNA polymerase I, B. (509 aa)
znrd1DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (115 aa)
gtf2h1General transcription factor IIH, polypeptide 1. (551 aa)
LOC103399096Histone H2A; Belongs to the histone H2A family. (133 aa)
ENSCSEP00000010388Histone H2B; Belongs to the histone H2B family. (122 aa)
ENSCSEP00000010656Histone domain-containing protein. (119 aa)
polr2fPolymerase (RNA) II (DNA directed) polypeptide F. (127 aa)
ENSCSEP00000010689Histone H2B; Belongs to the histone H2B family. (114 aa)
ENSCSEP00000010737Histone H2B; Belongs to the histone H2B family. (117 aa)
POLR2ERNA polymerase II subunit E. (229 aa)
mta1Metastasis associated 1. (540 aa)
Mta1Uncharacterized protein. (117 aa)
ercc6Excision repair cross-complementation group 6. (1444 aa)
LOC103379196Retinoblastoma binding protein 4, like. (442 aa)
LOC103396892Histone H2A; Belongs to the histone H2A family. (257 aa)
ttf1Si:ch73-376l24.2. (513 aa)
ENSCSEP00000012570Histone H2A; Belongs to the histone H2A family. (218 aa)
polr1bDNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1134 aa)
ubtfUpstream binding transcription factor. (737 aa)
taf1aTATA box binding protein (TBP)-associated factor, RNA polymerase I, A. (430 aa)
LOC103397872Histone H2A.V. (128 aa)
Rrn3RRN3 homolog, RNA polymerase I transcription factor. (217 aa)
polr1aDNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1628 aa)
H3-3BHistone H3.3. (136 aa)
ENSCSEP00000031260Uncharacterized protein; Belongs to the histone H2B family. (112 aa)
twistnbSHS2_Rpb7-N domain-containing protein. (373 aa)
ENSCSEP00000014012Histone H2A; Belongs to the histone H2A family. (131 aa)
ENSCSEP00000014019Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. (89 aa)
H3C14Histone domain-containing protein. (122 aa)
ENSCSEP00000014113Histone domain-containing protein; Belongs to the histone H2B family. (109 aa)
Your Current Organism:
Cynoglossus semilaevis
NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole
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