STRINGSTRING
snrpb snrpb ENSCSEP00000001120 ENSCSEP00000001120 pabpn1l pabpn1l nudt21 nudt21 LOC103380998 LOC103380998 CPSF7 CPSF7 CPSF3 CPSF3 ENSCSEP00000004020 ENSCSEP00000004020 cpsf2 cpsf2 pcf11 pcf11 ENSCSEP00000009916 ENSCSEP00000009916 fip1l1 fip1l1 LOC103395664 LOC103395664 clp1 clp1 pabpn1 pabpn1 cpsf6 cpsf6 LSM10 LSM10 NCBP1 NCBP1 cstf1 cstf1 cpsf1 cpsf1 cstf3 cstf3 WDR33 WDR33 sympk sympk cpsf4 cpsf4 ncbp2 ncbp2 lsm11 lsm11
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
snrpbSmall nuclear ribonucleoprotein-associated protein. (263 aa)
ENSCSEP00000001120Poly(A) polymerase gamma. (705 aa)
pabpn1lEPABP2. (260 aa)
nudt21Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (229 aa)
LOC103380998Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (648 aa)
CPSF7Cleavage and polyadenylation specific factor 7. (419 aa)
CPSF3Cleavage and polyadenylation specific factor 3. (690 aa)
ENSCSEP00000004020RRM domain-containing protein. (456 aa)
cpsf2Cleavage and polyadenylation specificity factor subunit 2. (795 aa)
pcf11Uncharacterized protein. (1110 aa)
ENSCSEP00000009916CID domain-containing protein. (99 aa)
fip1l1FIP1 like 1b (S. cerevisiae). (551 aa)
LOC103395664Stem-loop binding protein 2. (394 aa)
clp1Polyribonucleotide 5'-hydroxyl-kinase Clp1; Polynucleotide kinase that can phosphorylate the 5'-hydroxyl groups of double-stranded RNA (dsRNA), single-stranded RNA (ssRNA), double stranded DNA (dsDNA) and double-stranded DNA:RNA hybrids. dsRNA is phosphorylated more efficiently than dsDNA, and the RNA component of a DNA:RNA hybrid is phosphorylated more efficiently than the DNA component. Appears to have roles in both tRNA splicing and mRNA 3'-end formation. Component of the tRNA splicing endonuclease complex. Phosphorylates the 5'-terminus of the tRNA 3'-exon during tRNA splicing; thi [...] (441 aa)
pabpn1Poly(A) binding protein, nuclear 1. (305 aa)
cpsf6Cleavage and polyadenylation specific factor 6. (586 aa)
LSM10LSM10, U7 small nuclear RNA associated. (149 aa)
NCBP1Nuclear cap binding protein subunit 1. (822 aa)
cstf1Cleavage stimulation factor, 3' pre-RNA, subunit 1. (431 aa)
cpsf1Cleavage and polyadenylation specific factor 1. (1414 aa)
cstf3Cleavage stimulation factor, 3' pre-RNA, subunit 3. (715 aa)
WDR33WD repeat domain 33. (1061 aa)
sympkSymplekin. (1229 aa)
cpsf4Cleavage and polyadenylation specific factor 4. (305 aa)
ncbp2Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] (189 aa)
lsm11LSM11, U7 small nuclear RNA associated. (307 aa)
Your Current Organism:
Cynoglossus semilaevis
NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole
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