80 items (Cynoglossus semilaevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSCSEP00000025371	zf-C3HC4 domain-containing protein. (63 aa)
	ENSCSEP00000025383	Uncharacterized protein. (139 aa)
	LOC103398848	Protein kinase domain-containing protein. (770 aa)
	LOC103391289	Ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast); Belongs to the ubiquitin-conjugating enzyme family. (147 aa)
	LOC103384550	Uncharacterized protein. (1008 aa)
	map3k7	Mitogen-activated protein kinase kinase kinase 7. (603 aa)
	LOC103390226	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (542 aa)
	LOC103396237	Uncharacterized protein; Belongs to the peptidase C14A family. (464 aa)
	LOC103386727	RanBP-type and C3HC4-type zinc finger containing 1. (467 aa)
	ikbkb	Inhibitor of nuclear factor kappa B kinase subunit beta. (743 aa)
	ENSCSEP00000031011	Si:ch1073-396h14.1. (446 aa)
	LOC103391373	X-linked inhibitor of apoptosis. (438 aa)
	otulin	OTU deubiquitinase with linear linkage specificity a. (761 aa)
	ENSCSEP00000031239	Uncharacterized protein. (379 aa)
	ENSCSEP00000031268	Optineurin. (493 aa)
	spata2	Spermatogenesis associated 2. (562 aa)
	ENSCSEP00000032968	RanBP2-type domain-containing protein. (629 aa)
	ENSCSEP00000032969	Uncharacterized protein. (249 aa)
	nfatc4	Nuclear factor of activated T cells 4. (791 aa)
	LOC103385589	DUF4203 domain-containing protein. (317 aa)
	LOC103377512	TNF superfamily member 10; Belongs to the tumor necrosis factor family. (283 aa)
	LOC103386282	TNF superfamily member 10, like; Belongs to the tumor necrosis factor family. (411 aa)
	otud1	OTU deubiquitinase 1. (307 aa)
	tab1	TGF-beta activated kinase 1/MAP3K7 binding protein 1. (506 aa)
	tradd	Tnfrsf1a-associated via death domain. (288 aa)
	rps27a	Ribosomal protein S27a. (156 aa)
	Tnfaip3	Tumor necrosis factor, alpha-induced protein 3. (848 aa)
	LOC103377555	ADAM metallopeptidase domain 17a. (870 aa)
	smpd3	Sphingomyelin phosphodiesterase 3, neutral. (710 aa)
	LOC103399892	Cylindromatosis (turban tumor syndrome), like. (790 aa)
	usp4	Ubiquitin specific peptidase 4 (proto-oncogene); Belongs to the peptidase C19 family. (1006 aa)
	LOC103391567	TNF superfamily member 11; Belongs to the tumor necrosis factor family. (267 aa)
	ulk2	Unc-51 like autophagy activating kinase 2. (1027 aa)
	ikbkg	Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma. (618 aa)
	LOC103378994	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family. (384 aa)
	ulk1	Unc-51 like autophagy activating kinase 1. (1035 aa)
	tbk1	TANK-binding kinase 1. (711 aa)
	LOC103386043	DUF4203 domain-containing protein. (341 aa)
	mapkapk2	MAPK activated protein kinase 2a; Belongs to the protein kinase superfamily. (387 aa)
	LOC103386082	Inhibitor of nuclear factor kappa B kinase subunit epsilon. (662 aa)
	ENSCSEP00000007471	Tax1 (human T-cell leukemia virus type I) binding protein 1b. (787 aa)
	mib2	Mindbomb E3 ubiquitin protein ligase 2. (912 aa)
	LOC103377788	Ubiquitin carboxyl-terminal hydrolase. (597 aa)
	LOC103389543	Transmembrane protein 198b. (380 aa)
	map3k20	Uncharacterized protein. (803 aa)
	kxd1	KxDL motif containing 1. (180 aa)
	LOC103381366	ADAM metallopeptidase domain 17b. (798 aa)
	LOC103396927	BCL2 associated athanogene 4. (357 aa)
	LOC103387400	Component of inhibitor of nuclear factor kappa B kinase complex. (741 aa)
	ENSCSEP00000014947	SHANK-associated RH domain interacting protein. (326 aa)
	LOC103386321	Cylindromatosis (turban tumor syndrome), b. (617 aa)
	ripk1	Receptor (TNFRSF)-interacting serine-threonine kinase 1, like. (679 aa)
	LOC103395117	Baculoviral IAP repeat containing 2. (693 aa)
	ENSCSEP00000016080	Uncharacterized protein; Belongs to the peptidase C14A family. (471 aa)
	LOC103381447	Ubiquitin-conjugating enzyme E2D 3; Belongs to the ubiquitin-conjugating enzyme family. (148 aa)
	LOC103392089	Transmembrane protein 198a. (388 aa)
	LOC103376970	Sharpin and rbck1 related. (701 aa)
	cyld	Cylindromatosis (turban tumor syndrome), a; Belongs to the peptidase C19 family. (966 aa)
	LOC103381684	STIP1 homology and U-Box containing protein 1. (159 aa)
	rack1	Receptor for activated C kinase 1. (317 aa)
	nsmaf	Neutral sphingomyelinase (N-SMase) activation associated factor. (938 aa)
	otud7b	OTU deubiquitinase 7B. (926 aa)
	LOC103379370	PA domain-containing protein. (587 aa)
	ENSCSEP00000019312	Uncharacterized protein. (418 aa)
	madd	MAP-kinase activating death domain. (1587 aa)
	ENSCSEP00000019431	TNF receptor-associated factor. (456 aa)
	LOC103395906	Protein kinase domain-containing protein. (659 aa)
	LOC103394223	Tax1 (human T-cell leukemia virus type I) binding protein 1a. (946 aa)
	LOC103390066	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family. (596 aa)
	wdr31	WD repeat domain 31. (358 aa)
	sppl2b	Signal peptide peptidase-like 2. (555 aa)
	ENSCSEP00000023759	Ubiquitin-like domain-containing protein. (92 aa)
	ENSCSEP00000023769	Si:dkey-181m9.8. (385 aa)
	rnf31	Uncharacterized protein. (1063 aa)
	LOC103381844	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (153 aa)
	LOC112486244	Ubiquitin carboxyl-terminal hydrolase. (400 aa)
	ENSCSEP00000024798	CAP-GLY domain containing linker protein 3. (503 aa)
	smpd2	Sphingomyelin phosphodiesterase 2b, neutral membrane (neutral sphingomyelinase). (444 aa)
	UBB	Ubiquitin B. (744 aa)
	uba52	Ubiquitin A-52 residue ribosomal protein fusion product 1. (151 aa)

Your Current Organism:

Cynoglossus semilaevis

NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCSEP00000007471	ENSCSEP00000019312	ENSCSEP00000007471	ENSCSEP00000019312	Tax1 (human T-cell leukemia virus type I) binding protein 1b.	Uncharacterized protein.	0.488
ENSCSEP00000007471	ENSCSEP00000019431	ENSCSEP00000007471	ENSCSEP00000019431	Tax1 (human T-cell leukemia virus type I) binding protein 1b.	TNF receptor-associated factor.	0.488
ENSCSEP00000007471	ENSCSEP00000025371	ENSCSEP00000007471	ENSCSEP00000025371	Tax1 (human T-cell leukemia virus type I) binding protein 1b.	zf-C3HC4 domain-containing protein.	0.488
ENSCSEP00000007471	ENSCSEP00000025383	ENSCSEP00000007471	ENSCSEP00000025383	Tax1 (human T-cell leukemia virus type I) binding protein 1b.	Uncharacterized protein.	0.488
ENSCSEP00000007471	ENSCSEP00000031239	ENSCSEP00000007471	ENSCSEP00000031239	Tax1 (human T-cell leukemia virus type I) binding protein 1b.	Uncharacterized protein.	0.655
ENSCSEP00000007471	ENSCSEP00000031268	ENSCSEP00000007471	ENSCSEP00000031268	Tax1 (human T-cell leukemia virus type I) binding protein 1b.	Optineurin.	0.624
ENSCSEP00000007471	LOC103386082	ENSCSEP00000007471	ENSCSEP00000006982	Tax1 (human T-cell leukemia virus type I) binding protein 1b.	Inhibitor of nuclear factor kappa B kinase subunit epsilon.	0.692
ENSCSEP00000007471	LOC103390066	ENSCSEP00000007471	ENSCSEP00000022379	Tax1 (human T-cell leukemia virus type I) binding protein 1b.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.488
ENSCSEP00000007471	LOC103390226	ENSCSEP00000007471	ENSCSEP00000028815	Tax1 (human T-cell leukemia virus type I) binding protein 1b.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.488
ENSCSEP00000007471	LOC103391373	ENSCSEP00000007471	ENSCSEP00000031081	Tax1 (human T-cell leukemia virus type I) binding protein 1b.	X-linked inhibitor of apoptosis.	0.668
ENSCSEP00000007471	LOC103395117	ENSCSEP00000007471	ENSCSEP00000015627	Tax1 (human T-cell leukemia virus type I) binding protein 1b.	Baculoviral IAP repeat containing 2.	0.706
ENSCSEP00000007471	Tnfaip3	ENSCSEP00000007471	ENSCSEP00000002444	Tax1 (human T-cell leukemia virus type I) binding protein 1b.	Tumor necrosis factor, alpha-induced protein 3.	0.977
ENSCSEP00000007471	UBB	ENSCSEP00000007471	ENSCSEP00000025180	Tax1 (human T-cell leukemia virus type I) binding protein 1b.	Ubiquitin B.	0.597
ENSCSEP00000007471	ripk1	ENSCSEP00000007471	ENSCSEP00000015439	Tax1 (human T-cell leukemia virus type I) binding protein 1b.	Receptor (TNFRSF)-interacting serine-threonine kinase 1, like.	0.657
ENSCSEP00000007471	tbk1	ENSCSEP00000007471	ENSCSEP00000005905	Tax1 (human T-cell leukemia virus type I) binding protein 1b.	TANK-binding kinase 1.	0.729
ENSCSEP00000007471	tradd	ENSCSEP00000007471	ENSCSEP00000002284	Tax1 (human T-cell leukemia virus type I) binding protein 1b.	Tnfrsf1a-associated via death domain.	0.639
ENSCSEP00000014947	ENSCSEP00000019312	ENSCSEP00000014947	ENSCSEP00000019312	SHANK-associated RH domain interacting protein.	Uncharacterized protein.	0.406
ENSCSEP00000014947	ENSCSEP00000019431	ENSCSEP00000014947	ENSCSEP00000019431	SHANK-associated RH domain interacting protein.	TNF receptor-associated factor.	0.406
ENSCSEP00000014947	ENSCSEP00000023759	ENSCSEP00000014947	ENSCSEP00000023759	SHANK-associated RH domain interacting protein.	Ubiquitin-like domain-containing protein.	0.553
ENSCSEP00000014947	ENSCSEP00000023769	ENSCSEP00000014947	ENSCSEP00000023769	SHANK-associated RH domain interacting protein.	Si:dkey-181m9.8.	0.935