50 items (Cynoglossus semilaevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ercc3	Excision repair cross-complementation group 3. (785 aa)
	gtf2f2	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (270 aa)
	cdk7	Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (344 aa)
	LOC103397561	General transcription factor IIH subunit. (414 aa)
	taf3	TAF3 RNA polymerase II, TATA box binding protein (TBP)-associated facto. (937 aa)
	polr2h	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (155 aa)
	gtf2h3	General transcription factor IIH, polypeptide 3. (327 aa)
	gtf2e1	General transcription factor IIE, polypeptide 1, alpha. (443 aa)
	taf12	TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (156 aa)
	tbpl1	TBP-like 1. (194 aa)
	gtf2f1	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family. (533 aa)
	LOC103392281	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity. (277 aa)
	ENSCSEP00000019811	Uncharacterized protein. (185 aa)
	LOC103381809	TATA box binding protein like 2. (450 aa)
	taf6	TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (638 aa)
	POLR2E	RNA polymerase II subunit E. (229 aa)
	polr2f	Polymerase (RNA) II (DNA directed) polypeptide F. (127 aa)
	ENSCSEP00000001650	Uncharacterized protein. (183 aa)
	mnat1	MNAT1 component of CDK activating kinase. (311 aa)
	polr2c	Polymerase (RNA) II (DNA directed) polypeptide C. (275 aa)
	polr2l	Polymerase (RNA) II (DNA directed) polypeptide L. (67 aa)
	ENSCSEP00000003181	TAF4 domain-containing protein. (254 aa)
	polr2i	Polymerase (RNA) II (DNA directed) polypeptide I. (287 aa)
	polr2a	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1965 aa)
	LOC103390534	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (362 aa)
	taf13	TATA-box binding protein associated factor 13. (124 aa)
	taf4	TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor. (844 aa)
	polr2b	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1174 aa)
	ercc2	Excision repair cross-complementation group 2. (760 aa)
	gtf2e2	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase. (286 aa)
	polr2d	Polymerase (RNA) II (DNA directed) polypeptide D. (144 aa)
	gtf2a1l	General transcription factor IIA, 1-like. (393 aa)
	gtf2h1	General transcription factor IIH, polypeptide 1. (551 aa)
	taf5l	TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor. (602 aa)
	taf5	TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (756 aa)
	taf2	TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (1212 aa)
	ENSCSEP00000017625	TAFH domain-containing protein. (788 aa)
	polr2g	Polymerase (RNA) II (DNA directed) polypeptide G-like. (190 aa)
	ENSCSEP00000033437	TAF4 domain-containing protein. (260 aa)
	LOC103395620	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (249 aa)
	polr2j	Polymerase (RNA) II (DNA directed) polypeptide J. (117 aa)
	tbp	TATA box binding protein. (355 aa)
	GTF2A2	General transcription factor IIA subunit 2. (71 aa)
	taf10	TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (186 aa)
	gtf2a1	General transcription factor IIA, 1. (415 aa)
	gtf2h4	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (461 aa)
	ENSCSEP00000028852	Transcription initiation factor TFIID subunit. (1810 aa)
	taf11	TAF11 RNA polymerase II, TATA box binding protein (TBP)-associated factor. (204 aa)
	gtf2b	General transcription factor IIB. (318 aa)
	polr2k	Polymerase (RNA) II (DNA directed) polypeptide K. (58 aa)

Your Current Organism:

Cynoglossus semilaevis

NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCSEP00000001650	ENSCSEP00000003181	ENSCSEP00000001650	ENSCSEP00000003181	Uncharacterized protein.	TAF4 domain-containing protein.	0.743
ENSCSEP00000001650	ENSCSEP00000017625	ENSCSEP00000001650	ENSCSEP00000017625	Uncharacterized protein.	TAFH domain-containing protein.	0.743
ENSCSEP00000001650	ENSCSEP00000028852	ENSCSEP00000001650	ENSCSEP00000028852	Uncharacterized protein.	Transcription initiation factor TFIID subunit.	0.912
ENSCSEP00000001650	ENSCSEP00000033437	ENSCSEP00000001650	ENSCSEP00000033437	Uncharacterized protein.	TAF4 domain-containing protein.	0.743
ENSCSEP00000001650	GTF2A2	ENSCSEP00000001650	ENSCSEP00000030424	Uncharacterized protein.	General transcription factor IIA subunit 2.	0.907
ENSCSEP00000001650	LOC103390534	ENSCSEP00000001650	ENSCSEP00000004162	Uncharacterized protein.	TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.912
ENSCSEP00000001650	LOC103392281	ENSCSEP00000001650	ENSCSEP00000020853	Uncharacterized protein.	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	0.808
ENSCSEP00000001650	LOC103395620	ENSCSEP00000001650	ENSCSEP00000032319	Uncharacterized protein.	TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.	0.912
ENSCSEP00000001650	LOC103397561	ENSCSEP00000001650	ENSCSEP00000024966	Uncharacterized protein.	General transcription factor IIH subunit.	0.827
ENSCSEP00000001650	POLR2E	ENSCSEP00000001650	ENSCSEP00000011072	Uncharacterized protein.	RNA polymerase II subunit E.	0.896
ENSCSEP00000001650	cdk7	ENSCSEP00000001650	ENSCSEP00000025765	Uncharacterized protein.	Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily.	0.629
ENSCSEP00000001650	ercc2	ENSCSEP00000001650	ENSCSEP00000009411	Uncharacterized protein.	Excision repair cross-complementation group 2.	0.838
ENSCSEP00000001650	ercc3	ENSCSEP00000001650	ENSCSEP00000025795	Uncharacterized protein.	Excision repair cross-complementation group 3.	0.870
ENSCSEP00000001650	gtf2a1	ENSCSEP00000001650	ENSCSEP00000029585	Uncharacterized protein.	General transcription factor IIA, 1.	0.837
ENSCSEP00000001650	gtf2a1l	ENSCSEP00000001650	ENSCSEP00000009796	Uncharacterized protein.	General transcription factor IIA, 1-like.	0.844
ENSCSEP00000001650	gtf2b	ENSCSEP00000001650	ENSCSEP00000027575	Uncharacterized protein.	General transcription factor IIB.	0.919
ENSCSEP00000001650	gtf2e1	ENSCSEP00000001650	ENSCSEP00000023515	Uncharacterized protein.	General transcription factor IIE, polypeptide 1, alpha.	0.902
ENSCSEP00000001650	gtf2e2	ENSCSEP00000001650	ENSCSEP00000009520	Uncharacterized protein.	Transcription initiation factor IIE subunit beta; Recruits TFIIH to the initiation complex and stimulates the RNA polymerase II C-terminal domain kinase and DNA-dependent ATPase activities of TFIIH. Both TFIIH and TFIIE are required for promoter clearance by RNA polymerase.	0.892
ENSCSEP00000001650	gtf2f1	ENSCSEP00000001650	ENSCSEP00000020911	Uncharacterized protein.	Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.	0.891
ENSCSEP00000001650	gtf2f2	ENSCSEP00000001650	ENSCSEP00000025766	Uncharacterized protein.	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	0.808