64 items (Cynoglossus semilaevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	rock1	Rho-associated protein kinase; Protein kinase which is a key regulator of actin cytoskeleton and cell polarity. (1374 aa)
	LOC103380989	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1. (724 aa)
	LOC103380988	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2. (728 aa)
	srrm1	Serine/arginine repetitive matrix 1. (852 aa)
	scaf8	Uncharacterized protein. (1385 aa)
	LOC103379185	Uncharacterized protein. (212 aa)
	Twf1	Twinfilin actin-binding protein 1a. (498 aa)
	LOC103396929	Uncharacterized protein. (348 aa)
	ENSCSEP00000013162	CULLIN_2 domain-containing protein; Belongs to the cullin family. (743 aa)
	cpsf6	Cleavage and polyadenylation specific factor 6. (586 aa)
	ENSCSEP00000015249	Uncharacterized protein. (146 aa)
	LOC103390980	E3 ubiquitin protein ligase. (977 aa)
	LOC103398118	Musashi RNA binding protein 1. (297 aa)
	cops4	COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis). (489 aa)
	ENSCSEP00000017917	CULLIN_2 domain-containing protein; Belongs to the cullin family. (752 aa)
	tra2b	Transformer 2 beta homolog. (268 aa)
	ENSCSEP00000018653	Uncharacterized protein. (186 aa)
	ENSCSEP00000018661	Uncharacterized protein. (125 aa)
	tra2a	Transformer 2 alpha homolog. (301 aa)
	LOC103379076	Tropomodulin 2. (371 aa)
	LOC103385829	Twinfilin actin-binding protein 2b. (368 aa)
	cops2	COP9 signalosome subunit 2. (452 aa)
	LOC103378217	SR-related CTD associated factor 4. (751 aa)
	vim	Vimentin like; Belongs to the intermediate filament family. (456 aa)
	ENSCSEP00000021219	RRM domain-containing protein. (177 aa)
	ENSCSEP00000021231	RRM domain-containing protein. (224 aa)
	LOC103396448	RALY RNA binding protein like. (289 aa)
	LOC103395949	Cold inducible RNA binding protein b. (224 aa)
	rhobtb2	Rho related BTB domain containing 2a. (721 aa)
	LOC103389006	CULLIN_2 domain-containing protein; Belongs to the cullin family. (761 aa)
	ENSCSEP00000024100	Cullin domain-containing protein; Belongs to the cullin family. (153 aa)
	ENSCSEP00000024828	DWNN domain-containing protein. (113 aa)
	ENSCSEP00000024860	Uncharacterized protein. (234 aa)
	ENSCSEP00000029215	DWNN domain-containing protein. (154 aa)
	cul3	Cullin 3; Belongs to the cullin family. (780 aa)
	actb	Putative beta-actin. (375 aa)
	LOC103399026	Uncharacterized protein. (52 aa)
	ENSCSEP00000030285	Uncharacterized protein. (162 aa)
	ENSCSEP00000030290	RRM domain-containing protein. (104 aa)
	scaf4	SR-related CTD-associated factor 4a. (1132 aa)
	LOC103385815	RRM domain-containing protein. (293 aa)
	gps1	G protein pathway suppressor 1. (483 aa)
	hnrnpc	RRM domain-containing protein. (313 aa)
	CDC37	Cell division cycle 37 homolog (S. cerevisiae). (376 aa)
	LOC103380891	Heat shock protein 90, alpha (cytosolic), class B member 1. (733 aa)
	LOC103386225	Uncharacterized protein. (359 aa)
	ENSCSEP00000009123	Myosin VIa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1229 aa)
	txnl1	Thioredoxin-like 1. (301 aa)
	ENSCSEP00000025327	Rho-associated, coiled-coil containing protein kinase 2a; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. (1413 aa)
	cct7	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin. (540 aa)
	dazap1	DAZ associated protein 1. (416 aa)
	rbmx	RNA binding motif protein X-linked. (392 aa)
	cct2	Chaperonin containing TCP1, subunit 2 (beta). (530 aa)
	Rbbp6	RING-type domain-containing protein. (1491 aa)
	ENSCSEP00000007327	Phosphodiesterase. (845 aa)
	LOC103384878	Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily. (470 aa)
	RBBP6	RB binding protein 6, ubiquitin ligase. (1483 aa)
	spen	Spen family transcriptional repressor. (3539 aa)
	LOC103377698	Uncharacterized protein. (319 aa)
	LOC103378456	Transformer 2 beta homolog. (314 aa)
	LOC103383494	Uncharacterized protein. (375 aa)
	LOC103377973	Myosin VIb; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family. (1255 aa)
	ENSCSEP00000002960	RRM domain-containing protein. (133 aa)
	ENSCSEP00000002954	Si:ch1073-335m2.2. (2623 aa)

Your Current Organism:

Cynoglossus semilaevis

NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDC37	ENSCSEP00000018653	ENSCSEP00000032852	ENSCSEP00000018653	Cell division cycle 37 homolog (S. cerevisiae).	Uncharacterized protein.	0.465
CDC37	ENSCSEP00000018661	ENSCSEP00000032852	ENSCSEP00000018661	Cell division cycle 37 homolog (S. cerevisiae).	Uncharacterized protein.	0.465
CDC37	LOC103380891	ENSCSEP00000032852	ENSCSEP00000032336	Cell division cycle 37 homolog (S. cerevisiae).	Heat shock protein 90, alpha (cytosolic), class B member 1.	0.878
CDC37	LOC103380988	ENSCSEP00000032852	ENSCSEP00000000713	Cell division cycle 37 homolog (S. cerevisiae).	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 2.	0.885
CDC37	LOC103380989	ENSCSEP00000032852	ENSCSEP00000002570	Cell division cycle 37 homolog (S. cerevisiae).	Heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1.	0.885
CDC37	rhobtb2	ENSCSEP00000032852	ENSCSEP00000022873	Cell division cycle 37 homolog (S. cerevisiae).	Rho related BTB domain containing 2a.	0.465
ENSCSEP00000002954	ENSCSEP00000002960	ENSCSEP00000002954	ENSCSEP00000002960	Si:ch1073-335m2.2.	RRM domain-containing protein.	0.899
ENSCSEP00000002960	ENSCSEP00000002954	ENSCSEP00000002960	ENSCSEP00000002954	RRM domain-containing protein.	Si:ch1073-335m2.2.	0.899
ENSCSEP00000007327	ENSCSEP00000018653	ENSCSEP00000007327	ENSCSEP00000018653	Phosphodiesterase.	Uncharacterized protein.	0.526
ENSCSEP00000007327	ENSCSEP00000018661	ENSCSEP00000007327	ENSCSEP00000018661	Phosphodiesterase.	Uncharacterized protein.	0.526
ENSCSEP00000007327	rhobtb2	ENSCSEP00000007327	ENSCSEP00000022873	Phosphodiesterase.	Rho related BTB domain containing 2a.	0.526
ENSCSEP00000009123	ENSCSEP00000018653	ENSCSEP00000009123	ENSCSEP00000018653	Myosin VIa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Uncharacterized protein.	0.474
ENSCSEP00000009123	ENSCSEP00000018661	ENSCSEP00000009123	ENSCSEP00000018661	Myosin VIa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Uncharacterized protein.	0.474
ENSCSEP00000009123	rhobtb2	ENSCSEP00000009123	ENSCSEP00000022873	Myosin VIa; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Rho related BTB domain containing 2a.	0.474
ENSCSEP00000013162	ENSCSEP00000018653	ENSCSEP00000013162	ENSCSEP00000018653	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.605
ENSCSEP00000013162	ENSCSEP00000018661	ENSCSEP00000013162	ENSCSEP00000018661	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Uncharacterized protein.	0.605
ENSCSEP00000013162	cct2	ENSCSEP00000013162	ENSCSEP00000028886	CULLIN_2 domain-containing protein; Belongs to the cullin family.	Chaperonin containing TCP1, subunit 2 (beta).	0.454
ENSCSEP00000013162	cct7	ENSCSEP00000013162	ENSCSEP00000026133	CULLIN_2 domain-containing protein; Belongs to the cullin family.	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	0.495
ENSCSEP00000013162	cops2	ENSCSEP00000013162	ENSCSEP00000019990	CULLIN_2 domain-containing protein; Belongs to the cullin family.	COP9 signalosome subunit 2.	0.784
ENSCSEP00000013162	cops4	ENSCSEP00000013162	ENSCSEP00000017286	CULLIN_2 domain-containing protein; Belongs to the cullin family.	COP9 constitutive photomorphogenic homolog subunit 4 (Arabidopsis).	0.770