16 items (Cynoglossus semilaevis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSCSEP00000009012	Uncharacterized protein. (94 aa)
	SOX14	SRY-box transcription factor 14. (254 aa)
	bsx	Brain-specific homeobox. (290 aa)
	actb	Putative beta-actin. (375 aa)
	Sox5	SRY-box transcription factor 5. (744 aa)
	LOC103392195	Small ubiquitin-related modifier. (100 aa)
	LOC103391098	Neurogenin 1. (198 aa)
	sox6	HMG box domain-containing protein. (793 aa)
	LOC103378746	SRY-box transcription factor 6. (778 aa)
	LOC103383557	Small ubiquitin-related modifier. (96 aa)
	LOC103378402	Small ubiquitin-related modifier. (94 aa)
	myt1	Uncharacterized protein. (1036 aa)
	sox1	SRY-box transcription factor 1a. (318 aa)
	Sox1	SRY-box transcription factor 1. (136 aa)
	sox21	SRY-box transcription factor 21b. (248 aa)
	sumo1	Small ubiquitin-related modifier. (101 aa)

Your Current Organism:

Cynoglossus semilaevis

NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCSEP00000009012	LOC103378746	ENSCSEP00000009012	ENSCSEP00000002663	Uncharacterized protein.	SRY-box transcription factor 6.	0.430
ENSCSEP00000009012	LOC103391098	ENSCSEP00000009012	ENSCSEP00000019907	Uncharacterized protein.	Neurogenin 1.	0.644
ENSCSEP00000009012	Sox5	ENSCSEP00000009012	ENSCSEP00000022985	Uncharacterized protein.	SRY-box transcription factor 5.	0.539
ENSCSEP00000009012	sox21	ENSCSEP00000009012	ENSCSEP00000008482	Uncharacterized protein.	SRY-box transcription factor 21b.	0.427
ENSCSEP00000009012	sox6	ENSCSEP00000009012	ENSCSEP00000001602	Uncharacterized protein.	HMG box domain-containing protein.	0.430
LOC103378402	sumo1	ENSCSEP00000004643	ENSCSEP00000008829	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.663
LOC103378746	ENSCSEP00000009012	ENSCSEP00000002663	ENSCSEP00000009012	SRY-box transcription factor 6.	Uncharacterized protein.	0.430
LOC103378746	LOC103391098	ENSCSEP00000002663	ENSCSEP00000019907	SRY-box transcription factor 6.	Neurogenin 1.	0.431
LOC103378746	myt1	ENSCSEP00000002663	ENSCSEP00000005336	SRY-box transcription factor 6.	Uncharacterized protein.	0.430
LOC103383557	sumo1	ENSCSEP00000004585	ENSCSEP00000008829	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.656
LOC103391098	ENSCSEP00000009012	ENSCSEP00000019907	ENSCSEP00000009012	Neurogenin 1.	Uncharacterized protein.	0.644
LOC103391098	LOC103378746	ENSCSEP00000019907	ENSCSEP00000002663	Neurogenin 1.	SRY-box transcription factor 6.	0.431
LOC103391098	Sox5	ENSCSEP00000019907	ENSCSEP00000022985	Neurogenin 1.	SRY-box transcription factor 5.	0.539
LOC103391098	myt1	ENSCSEP00000019907	ENSCSEP00000005336	Neurogenin 1.	Uncharacterized protein.	0.644
LOC103391098	sox21	ENSCSEP00000019907	ENSCSEP00000008482	Neurogenin 1.	SRY-box transcription factor 21b.	0.523
LOC103391098	sox6	ENSCSEP00000019907	ENSCSEP00000001602	Neurogenin 1.	HMG box domain-containing protein.	0.430
LOC103392195	sumo1	ENSCSEP00000017973	ENSCSEP00000008829	Small ubiquitin-related modifier.	Small ubiquitin-related modifier.	0.659
Sox5	ENSCSEP00000009012	ENSCSEP00000022985	ENSCSEP00000009012	SRY-box transcription factor 5.	Uncharacterized protein.	0.539
Sox5	LOC103391098	ENSCSEP00000022985	ENSCSEP00000019907	SRY-box transcription factor 5.	Neurogenin 1.	0.539
Sox5	myt1	ENSCSEP00000022985	ENSCSEP00000005336	SRY-box transcription factor 5.	Uncharacterized protein.	0.540