STRINGSTRING
pabpc4 pabpc4 lsm6 lsm6 c1d c1d PNPT1 PNPT1 ENSCSEP00000001696 ENSCSEP00000001696 LOC103385757 LOC103385757 LOC103382271 LOC103382271 hspa9 hspa9 LOC103384618 LOC103384618 parn parn lsm2 lsm2 dis3 dis3 wdr61 wdr61 LOC103385968 LOC103385968 cnot3 cnot3 LOC103388317 LOC103388317 zcchc7 zcchc7 exosc10 exosc10 LOC103388524 LOC103388524 exosc3 exosc3 eno3 eno3 btg1 btg1 eno1 eno1 ddx6 ddx6 exosc5 exosc5 dis3l dis3l patl1 patl1 LOC103396910 LOC103396910 Dcp1b Dcp1b Patl2 Patl2 LOC103393952 LOC103393952 LOC103395150 LOC103395150 LOC103397020 LOC103397020 cnot10 cnot10 lsm1 lsm1 pfkl pfkl exosc4 exosc4 LOC103390988 LOC103390988 exosc7 exosc7 skiv2l skiv2l tent4b tent4b tent4a tent4a LOC103391035 LOC103391035 pfkp pfkp edc3 edc3 LOC103392954 LOC103392954 LOC103394835 LOC103394835 LOC103394833 LOC103394833 pabpc1 pabpc1 dhx36 dhx36 cnot6l cnot6l exosc9 exosc9 lsm7 lsm7 lsm3 lsm3 cnot4 cnot4 LOC103394269 LOC103394269 ttc37 ttc37 Cnot2 Cnot2 lsm4 lsm4 cnot9 cnot9 pan3 pan3 LOC103390172 LOC103390172 dcp2 dcp2 LOC103391261 LOC103391261 LOC103391308 LOC103391308 mtrex mtrex exosc8 exosc8 LOC103383092 LOC103383092 cnot8 cnot8 LOC103396649 LOC103396649 mphosph6 mphosph6 Cnot1 Cnot1 pan2 pan2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
pabpc4Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (627 aa)
lsm6LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated. (98 aa)
c1dC1D nuclear receptor corepressor. (155 aa)
PNPT1Polyribonucleotide nucleotidyltransferase 1. (703 aa)
ENSCSEP00000001696Zgc:103759. (269 aa)
LOC103385757Enolase 1b, (alpha). (431 aa)
LOC103382271Transducer of ERBB2, 1b. (332 aa)
hspa9Heat shock protein 9; Belongs to the heat shock protein 70 family. (676 aa)
LOC103384618ATP-dependent 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family. ATP-dependent PFK group I subfamily. Eukaryotic two domain clade 'E' sub-subfamily. (780 aa)
parnPoly(A)-specific ribonuclease (deadenylation nuclease). (692 aa)
lsm2U6 snRNA-associated Sm-like protein LSm2; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (95 aa)
dis3DIS3 exosome endoribonuclease and 3'-5' exoribonuclease; Belongs to the RNR ribonuclease family. (948 aa)
wdr61WD repeat domain 61. (276 aa)
LOC103385968ATP-dependent 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family. ATP-dependent PFK group I subfamily. Eukaryotic two domain clade 'E' sub-subfamily. (778 aa)
cnot3CCR4-NOT transcription complex, subunit 3a. (922 aa)
LOC103388317Uncharacterized protein. (816 aa)
zcchc7Zinc finger, CCHC domain containing 7. (635 aa)
exosc10Exosome component 10. (896 aa)
LOC103388524Si:dkey-79d12.5. (300 aa)
exosc3Exosome component 3. (244 aa)
eno3Enolase 3, (beta, muscle). (445 aa)
btg1B-cell translocation gene 1, anti-proliferative. (226 aa)
eno1Enolase 1a, (alpha). (445 aa)
ddx6DEAD (Asp-Glu-Ala-Asp) box helicase 6; Belongs to the DEAD box helicase family. (482 aa)
exosc5Exosome component 5. (219 aa)
dis3lDIS3 like exosome 3'-5' exoribonuclease; Belongs to the RNR ribonuclease family. (1047 aa)
patl1PAT1 homolog 1, processing body mRNA decay factor. (833 aa)
LOC103396910U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (184 aa)
Dcp1bDecapping mRNA 1B. (646 aa)
Patl2PAT1 homolog 2. (676 aa)
LOC103393952Uncharacterized protein; Belongs to the DEAD box helicase family. (489 aa)
LOC103395150B-cell translocation gene 4. (268 aa)
LOC103397020Endo/exonuclease/phosphatase domain-containing protein. (426 aa)
cnot10CCR4-NOT transcription complex, subunit 10. (735 aa)
lsm1U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (145 aa)
pfklATP-dependent 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family. ATP-dependent PFK group I subfamily. Eukaryotic two domain clade 'E' sub-subfamily. (780 aa)
exosc4Exosome component 4. (245 aa)
LOC103390988CCR4-NOT transcription complex, subunit 6a. (559 aa)
exosc7Exosome component 7. (291 aa)
skiv2lSKI2 homolog, superkiller viralicidic activity 2-like. (1234 aa)
tent4bTerminal nucleotidyltransferase 4B. (676 aa)
tent4aTerminal nucleotidyltransferase 4A. (831 aa)
LOC103391035Uncharacterized protein. (494 aa)
pfkpATP-dependent 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family. ATP-dependent PFK group I subfamily. Eukaryotic two domain clade 'E' sub-subfamily. (820 aa)
edc3Enhancer of mRNA decapping 3 homolog (S. cerevisiae). (478 aa)
LOC103392954Transducer of ERBB2, 1a. (339 aa)
LOC103394835BTG anti-proliferation factor 3. (222 aa)
LOC103394833B-cell translocation gene 3. (235 aa)
pabpc1Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (632 aa)
dhx36DEAH (Asp-Glu-Ala-His) box polypeptide 36. (1069 aa)
cnot6lCCR4-NOT transcription complex, subunit 6-like. (553 aa)
exosc9Exosome component 9. (400 aa)
lsm7LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated. (120 aa)
lsm3U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (133 aa)
cnot4CCR4-NOT transcription complex, subunit 4a. (838 aa)
LOC103394269Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (633 aa)
ttc37Tetratricopeptide repeat domain 37. (1765 aa)
Cnot2Uncharacterized protein. (75 aa)
lsm4U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (142 aa)
cnot9CCR4-NOT transcription complex subunit 9. (299 aa)
pan3PAN2-PAN3 deadenylation complex subunit PAN3; Regulatory subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA deca [...] (794 aa)
LOC103390172Exosome component 2. (291 aa)
dcp2Decapping mRNA 2. (390 aa)
LOC103391261Decapping enzyme, scavenger. (330 aa)
LOC103391308CCR4-NOT transcription complex, subunit 7. (286 aa)
mtrexMtr4 exosome RNA helicase. (1053 aa)
exosc8Exosome component 8. (277 aa)
LOC103383092NOT2_3_5 domain-containing protein. (564 aa)
cnot8CCR4-NOT transcription complex, subunit 8. (286 aa)
LOC103396649ATP-dependent 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis; Belongs to the phosphofructokinase type A (PFKA) family. ATP-dependent PFK group I subfamily. Eukaryotic two domain clade 'E' sub-subfamily. (791 aa)
mphosph6M-phase phosphoprotein 6. (161 aa)
Cnot1CCR4-NOT transcription complex, subunit 1. (829 aa)
pan2PAN2-PAN3 deadenylation complex catalytic subunit PAN2; Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in general and miRNA-mediated mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein (PABP). PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent [...] (1195 aa)
Your Current Organism:
Cynoglossus semilaevis
NCBI taxonomy Id: 244447
Other names: C. semilaevis, Cynoglossus (Arelia) semilaevis, half-smooth tongue sole, tongue sole
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